Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MZN47_RS04795 Genome accession   NZ_CP096149
Coordinates   933909..935282 (-) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain FSL J1-0158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928909..940282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN47_RS04770 (MZN47_04765) epsC 929012..929626 (-) 615 WP_003737962.1 serine O-acetyltransferase EpsC -
  MZN47_RS04775 (MZN47_04770) gltX 930024..931499 (-) 1476 WP_069887664.1 glutamate--tRNA ligase -
  MZN47_RS04780 (MZN47_04775) ispF 931518..931991 (-) 474 WP_070034001.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MZN47_RS04785 (MZN47_04780) ispD 931984..932682 (-) 699 WP_070034000.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MZN47_RS04790 (MZN47_04785) - 932702..933775 (-) 1074 WP_003737958.1 PIN/TRAM domain-containing protein -
  MZN47_RS04795 (MZN47_04790) radA 933909..935282 (-) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  MZN47_RS04800 (MZN47_04795) - 935429..937891 (-) 2463 WP_003737956.1 ATP-dependent Clp protease ATP-binding subunit -
  MZN47_RS04805 (MZN47_04800) - 937920..938942 (-) 1023 WP_070033999.1 protein arginine kinase -
  MZN47_RS04810 (MZN47_04805) - 938939..939457 (-) 519 WP_070033998.1 UvrB/UvrC motif-containing protein -
  MZN47_RS04815 (MZN47_04810) - 939470..939928 (-) 459 WP_003723894.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=679748 MZN47_RS04795 WP_003729197.1 933909..935282(-) (radA) [Listeria monocytogenes strain FSL J1-0158]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=679748 MZN47_RS04795 WP_003729197.1 933909..935282(-) (radA) [Listeria monocytogenes strain FSL J1-0158]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACTGGAG
AGCCTTCGAAAGCGACTCCAATTACTCAAATAGAAAGTGAAACAGAAAAACGGGTTGAAACAAATATGCCGGAGTTAAAT
AGAGTCCTCGGTGGTGGTGTGGTTCCAGGATCTATGGTACTTGTCGGGGGCGATCCTGGTATCGGGAAGTCGACATTATT
ATTACAAGTTTCAGCTCAACTCACGCTCACGAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCTATCAAACAAACGA
AGCTACGTGCAGAACGTTTGCAAGTTTCGGGAGATAATTTATATGTATATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCGGATTTTGTAGTCATTGATTCTATTCAGACCGTTTATCATCCGGATGTTACGAGTGCGGC
AGGGAGTGTTTCGCAGGTTAGGGAATGTACAGCAGCATTGATGCGAATTGCCAAAATGCAAAACATTGCTATCTTTATTG
TTGGGCATGTAACGAAGGAAGGCGCAATTGCGGGACCGCGCCTGCTTGAACATATGGTTGATACAGTACTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTTGTTGAAGTTGCTAATCCTTCCGAAGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCGGGCT
CAACGGTTGTAGCTTCTATGGAAGGGACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTTGGATT
AATGCTGCAAAATCAAGATGCTTATTTGAAAGCAGCGGGTGGGGTTAAACTTGATGAACCTGCAGTGGATTTGGCAGTTG
CAGTAAGTGTGGCATCTAGTTATCGTGATAAACCAACGAGAAGCACAGATTGCTTTATCGGAGAACTTGGACTTACAGGT
GAAATTCGTCGAGTAGCAAGAATTGAACAACGCGTGCAAGAAGCGGCGAAACTAGGATTTAAACGGATTTTCATTCCGAA
AAATAATGAAGGTACTTGGAAAATACCGAAAGATGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643