Detailed information NTG0679668

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OBG92_RS06900
• Genome accession: NZ_CP109657
• Coordinates: 1466913..1467917 (+)
• Length: 334 a.a.
• NCBI ID: WP_034080333.1
• Uniprot ID: A0A2R3IPF6
• Organism: Pseudomonas aeruginosa strain Zw26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1461913..1472917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OBG92_RS06870 (OBG92_01355)	fghA	1462009..1462860 (+)	852	WP_003152338.1	S-formylglutathione hydrolase	-
OBG92_RS06875 (OBG92_01356)	ispF	1462931..1463404 (+)	474	WP_058146084.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OBG92_RS06880 (OBG92_01357)	truD	1463401..1464468 (+)	1068	WP_053816832.1	tRNA pseudouridine(13) synthase TruD	-
OBG92_RS06885 (OBG92_01358)	surE	1464456..1465205 (+)	750	WP_034080331.1	5'/3'-nucleotidase SurE	-
OBG92_RS06890 (OBG92_01359)	-	1465238..1465873 (+)	636	WP_074197311.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OBG92_RS06895 (OBG92_01360)	-	1465919..1466812 (+)	894	WP_043102908.1	peptidoglycan DD-metalloendopeptidase family protein	-
OBG92_RS06900 (OBG92_01361)	rpoS	1466913..1467917 (+)	1005	WP_034080333.1	RNA polymerase sigma factor RpoS	Regulator
OBG92_RS06905 (OBG92_01362)	fdxA	1468343..1468666 (-)	324	WP_003092272.1	ferredoxin FdxA	-
OBG92_RS06910 (OBG92_01363)	mutS	1468733..1471285 (-)	2553	WP_264315775.1	DNA mismatch repair protein MutS	-
OBG92_RS06915 (OBG92_01364)	-	1471411..1472418 (-)	1008	WP_256157352.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38263.48 Da
• Isoelectric Point: 5.0478

>NTDB_id=679668 OBG92_RS06900 WP_034080333.1 1466913..1467917(+) (rpoS) [Pseudomonas aeruginosa strain Zw26]
MALKKEGPEFDHDDEVLLLEPGIMLDELSADEQPSLRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLSELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=679668 OBG92_RS06900 WP_034080333.1 1466913..1467917(+) (rpoS) [Pseudomonas aeruginosa strain Zw26]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGACGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GCTGTCTGCCGACGAGCAGCCTTCTCTCCGGGCAACTCCAAAAGCCACCACCTCCTTCTCTTCCAAGCAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGCTGACGCCCGAAGAG
GAAGTCCACTTCGCCCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGACTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTCGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTGAACGTCTACCTGCGTGCGGC
GCGGGAGCTGACCCACAAGCTCGACCACGAACCGTCCCCCGAGGAAATCGCCAACCTGCTGGAAAAACCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAGCGGGTCACTTCGGTAGACGTTTCCCTTGGCCCGGACTCCGACAAGACCCTGCTC
GACACCCTGACCGACGATCGCCCCACCGACCCGTGCGAGTTGCTGCAGGACGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGTCGGAACTCACCGACAAGCAGCGTGAAGTGGTGATTCGCCGCTTCGGCCTGCGCGGGCATGAAAGCAGCACGCTGG
AGGAGGTTGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTCCGCCAGATCCAGGTGGAGGCACTCAAGCGCCTGCGCGAG
ATACTGGAGAAGAACGGCCTGTCGAGCGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A2R3IPF6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.768	98.204	0.656