Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OKF33_RS06320 Genome accession   NZ_CP109654
Coordinates   1211394..1213208 (-) Length   604 a.a.
NCBI ID   WP_264306032.1    Uniprot ID   -
Organism   Campylobacter coli strain 10-02932     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1206394..1218208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS06295 - 1206973..1207578 (-) 606 WP_002789871.1 hypothetical protein -
  OKF33_RS06300 - 1207822..1208133 (+) 312 WP_002777486.1 hypothetical protein -
  OKF33_RS06305 hemE 1208281..1209303 (+) 1023 WP_002789869.1 uroporphyrinogen decarboxylase -
  OKF33_RS06310 - 1209300..1210202 (+) 903 WP_002777490.1 radical SAM protein -
  OKF33_RS06315 - 1210199..1211392 (-) 1194 WP_230094316.1 hypothetical protein -
  OKF33_RS06320 uvrC 1211394..1213208 (-) 1815 WP_264306032.1 excinuclease ABC subunit UvrC Machinery gene
  OKF33_RS06325 - 1213201..1213677 (-) 477 WP_002777499.1 hypothetical protein -
  OKF33_RS06330 guaA 1213814..1215349 (+) 1536 WP_002793848.1 glutamine-hydrolyzing GMP synthase -
  OKF33_RS06335 - 1215523..1216133 (+) 611 Protein_1223 class I SAM-dependent DNA methyltransferase -
  OKF33_RS06340 - 1216256..1216813 (-) 558 WP_002783671.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69676.68 Da        Isoelectric Point: 9.1096

>NTDB_id=679628 OKF33_RS06320 WP_264306032.1 1211394..1213208(-) (uvrC) [Campylobacter coli strain 10-02932]
MAEILLKNTLKEELQTLPANAGVYQYFNAEGKLLYVGKAKNLKNRVRSYFAFTPNLRANPKNSLRIQKMIEEAVHLEFIT
TNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFNEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYP
LKQKASCKSPCIFYQISRCLAPCDKKITQEEYRLILDKAINALLSPSILVKNLEKQMLHLAQNENYEEAAKIRDQIATIR
DLEIKVEIDIAKLEDFEIFALACEGSMLSTLRFVVQNGKIISANSKITPLKNNTDFDKNEIYKQLILENFSIDIPLVTNT
IYVYEEFEDRELLEEILSQRFDKKISIKVPKIGEKRRICDLAFQNACLNIQKEQKNSDFNIQKELKNYFELENLPNCIEV
FDNSHMQGVANVGAMVAYKMGAWDKSNYRKFHLKYKNDYEQMREVLTRRALDFDKMPAPDLWLIDGGKALLDLAKEIILS
SGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFALSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLAK
LGLSSGIIQKLLAYYGSFEAIYEANFEELCQLAGKKSAQKIKED

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=679628 OKF33_RS06320 WP_264306032.1 1211394..1213208(-) (uvrC) [Campylobacter coli strain 10-02932]
ATGGCTGAAATTTTACTTAAAAATACTCTCAAAGAAGAGCTTCAAACCCTACCTGCAAATGCTGGAGTGTATCAGTATTT
TAATGCCGAAGGAAAGCTTTTATATGTAGGCAAGGCTAAAAATCTTAAAAACCGCGTAAGATCTTATTTTGCTTTTACCC
CAAATTTACGCGCCAATCCAAAAAATTCTTTAAGAATTCAAAAAATGATAGAAGAAGCGGTGCATTTGGAATTTATTACA
ACAAATTCAGAAGCTGATGCTTTGATTTTGGAAAATTCTTTTATCAAGCAACTTCATCCAAAATACAATATTTTACTAAG
AGATGATAAGACTTATCCTTATATTTATGTAGATTTTAATGAAGAATTTCCGCGTTTTGAAATCACTAGAAAATTAGTTA
AAAAAAGTAAAATCAAATATTTTGGCCCCTTTTTTAAAGGGGCTAGAGAGCTTTTAGATGCGCTTTATTTGTATTATCCA
TTAAAACAAAAAGCAAGTTGTAAATCTCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCGCCTTGTGATAAAAAAAT
TACCCAAGAAGAATATCGTTTGATTTTAGATAAAGCTATCAATGCTCTTTTAAGTCCCAGTATTTTAGTGAAAAATTTAG
AAAAGCAAATGCTTCATTTAGCCCAAAATGAAAATTATGAAGAAGCGGCAAAAATAAGAGATCAGATTGCTACGATAAGG
GATTTGGAAATTAAAGTTGAGATTGATATTGCTAAATTAGAAGACTTTGAAATTTTTGCTTTAGCTTGTGAAGGCTCTAT
GCTTTCAACTTTGCGTTTTGTCGTGCAAAATGGAAAAATCATCAGTGCCAATTCTAAAATCACCCCACTTAAAAATAATA
CAGATTTTGATAAAAATGAGATTTATAAGCAACTTATTTTAGAAAATTTTAGCATAGACATTCCCTTGGTTACAAATACT
ATTTATGTTTATGAAGAATTTGAAGATAGGGAGCTTTTGGAAGAAATTTTAAGCCAGAGATTTGATAAAAAAATCAGCAT
TAAAGTTCCTAAAATAGGAGAAAAAAGAAGAATTTGTGATTTGGCATTTCAAAATGCGTGTTTGAATATACAAAAAGAGC
AAAAAAATAGTGATTTTAATATACAAAAAGAACTTAAAAATTATTTCGAGCTTGAAAATTTGCCAAATTGTATAGAGGTT
TTTGATAATTCTCATATGCAAGGTGTGGCGAATGTAGGAGCTATGGTAGCTTATAAAATGGGTGCTTGGGATAAGTCAAA
TTATAGAAAATTTCATTTAAAATATAAAAATGACTATGAGCAAATGCGCGAAGTTTTAACGCGTAGGGCATTAGATTTTG
ATAAAATGCCTGCTCCTGATTTGTGGCTTATAGACGGGGGAAAGGCTTTACTTGATTTAGCTAAAGAAATCATTCTAAGC
AGTGGGGCAAATGTTGATATTTTAGCAATTTCAAAAGAAAAAATCGATGCTAAAGCTCATCGTGCTAAAGGAGGGGCTAA
AGATAAAATTCATTCTTTAAAAGGAGAATTTGCCCTAAGTATTAACGATAAAAAATTACAATTCTTACAGAAATTAAGAG
ATGAAGCGCATCGTTTTGCCATAAGTTTTCATCAAAATACTAAGAAAAAACAAGATTTATCAAGCTCTAAGCTTGCAAAA
TTAGGGCTTAGTTCGGGAATTATACAAAAACTTTTGGCGTATTATGGAAGTTTTGAAGCTATTTATGAGGCAAATTTTGA
AGAATTGTGCCAATTAGCAGGAAAAAAATCAGCGCAAAAAATAAAGGAAGATTGA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(21-103)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-541)

UvrB/uvrC motif (UVR)

(209-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

46.689

97.517

0.455