Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MZO21_RS11495 Genome accession   NZ_CP096120
Coordinates   2309876..2310202 (-) Length   108 a.a.
NCBI ID   WP_171501195.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2304876..2315202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS11480 (MZO21_11475) trpE 2306635..2308128 (-) 1494 WP_154771987.1 anthranilate synthase component I -
  MZO21_RS11485 (MZO21_11480) - 2308251..2308919 (-) 669 WP_154771963.1 phosphoglycolate phosphatase -
  MZO21_RS11490 (MZO21_11485) - 2308981..2309706 (-) 726 WP_154771962.1 FHA domain-containing protein -
  MZO21_RS11495 (MZO21_11490) hns 2309876..2310202 (-) 327 WP_171501195.1 H-NS histone family protein Regulator
  MZO21_RS11500 (MZO21_11495) - 2310326..2310757 (-) 432 WP_248103836.1 thioesterase family protein -
  MZO21_RS11505 (MZO21_11500) - 2310766..2311959 (-) 1194 WP_154771959.1 heme biosynthesis protein HemY -
  MZO21_RS11510 (MZO21_11505) - 2311963..2312784 (-) 822 WP_154771958.1 hypothetical protein -
  MZO21_RS11515 (MZO21_11510) - 2312781..2313560 (-) 780 WP_154771957.1 uroporphyrinogen-III synthase -
  MZO21_RS11520 (MZO21_11515) hemC 2313562..2314479 (-) 918 WP_154771956.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12217.05 Da        Isoelectric Point: 9.5383

>NTDB_id=679579 MZO21_RS11495 WP_171501195.1 2309876..2310202(-) (hns) [Acinetobacter portensis strain JNE5]
MMPDISNMSVEQLKRLQLEAEALIASKKDQAIEDAYNQILAIAESVGLSVEQIVEFGSVKRKKGTRKAVEPRYRNKGNTE
ETWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=679579 MZO21_RS11495 WP_171501195.1 2309876..2310202(-) (hns) [Acinetobacter portensis strain JNE5]
ATAATGCCAGATATTAGTAATATGTCTGTTGAACAGTTAAAACGTTTACAGCTTGAAGCTGAAGCTTTAATTGCATCTAA
AAAAGATCAAGCAATAGAAGATGCATATAATCAAATTTTAGCAATTGCTGAAAGTGTTGGTTTATCTGTAGAGCAAATTG
TTGAGTTTGGTTCTGTTAAACGTAAAAAAGGCACACGTAAAGCAGTAGAACCTAGATACCGCAATAAGGGTAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCTCGCTGGTTAGTTGCACAACTTGAAAAAGGTGCAAAGTTAGAAGATTTTCT
TATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824