Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MZO21_RS02135 Genome accession   NZ_CP096120
Coordinates   414969..415847 (+) Length   292 a.a.
NCBI ID   WP_154773377.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409969..420847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS02105 (MZO21_02100) - 410078..411325 (-) 1248 WP_154773372.1 YhjD/YihY/BrkB family envelope integrity protein -
  MZO21_RS02110 (MZO21_02105) wrbA 411440..412033 (+) 594 WP_154773373.1 NAD(P)H:quinone oxidoreductase -
  MZO21_RS02115 (MZO21_02110) - 412053..412409 (-) 357 WP_248103210.1 hypothetical protein -
  MZO21_RS02120 (MZO21_02115) - 412538..413113 (-) 576 WP_171501335.1 xanthine phosphoribosyltransferase -
  MZO21_RS02125 (MZO21_02120) - 413202..413915 (-) 714 WP_248103212.1 DUF3108 domain-containing protein -
  MZO21_RS02130 (MZO21_02125) - 414066..414740 (-) 675 WP_154773376.1 hypothetical protein -
  MZO21_RS02135 (MZO21_02130) tonB2 414969..415847 (+) 879 WP_154773377.1 TonB family protein Machinery gene
  MZO21_RS02140 (MZO21_02135) ybeY 415954..416436 (-) 483 WP_154773378.1 rRNA maturation RNase YbeY -
  MZO21_RS02145 (MZO21_02140) - 416462..417535 (-) 1074 WP_154773379.1 PhoH family protein -
  MZO21_RS02150 (MZO21_02145) miaB 417573..419027 (-) 1455 WP_248103214.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33190.90 Da        Isoelectric Point: 9.4308

>NTDB_id=679561 MZO21_RS02135 WP_154773377.1 414969..415847(+) (tonB2) [Acinetobacter portensis strain JNE5]
MSIKIFLTPFRSHWWQDSIFTASLLIAGFLHLIVLTLQFAEPTATDTSTKDIAVSIRPAEKEVKNADFLAQENQQGAGTF
REAHRISSDMPAAMEDLSAGEQQLKSLEQMQQQRELSFEEKVLMTTLSWKKEAEQNNRKKAMEQLNSQFQAKAAMVASIE
AQYLKRQQNFSRTQKVKTLDGIQAKKDVSAAYMDKFREKVEFYGNRYYPEQAKQMRLSGEVRLMVILNANGGIRAIRLID
SSGHAILDEAAKASVRKAAPYGAFDSKMKDISELRIIRTWRFDPAEAEIEVN

Nucleotide


Download         Length: 879 bp        

>NTDB_id=679561 MZO21_RS02135 WP_154773377.1 414969..415847(+) (tonB2) [Acinetobacter portensis strain JNE5]
ATGTCAATTAAAATATTTTTAACACCTTTTAGAAGCCACTGGTGGCAAGATTCTATTTTTACTGCATCATTGTTGATTGC
AGGATTTTTGCATCTCATTGTTTTGACTCTACAATTTGCAGAGCCAACAGCAACTGACACATCGACAAAAGATATTGCAG
TTTCTATTCGACCTGCTGAAAAAGAAGTAAAAAATGCAGATTTTTTAGCACAAGAAAATCAACAAGGGGCGGGGACATTT
CGTGAAGCACATCGGATATCAAGCGATATGCCTGCTGCGATGGAAGATTTAAGCGCTGGTGAACAACAACTTAAAAGTTT
AGAGCAAATGCAACAACAACGTGAATTGAGCTTTGAAGAAAAAGTGTTAATGACCACGTTAAGTTGGAAAAAAGAAGCAG
AGCAAAATAACCGTAAAAAGGCGATGGAACAACTCAATAGCCAATTTCAAGCCAAAGCAGCAATGGTTGCAAGCATTGAA
GCACAATATTTAAAACGTCAGCAAAATTTCAGTCGTACTCAAAAAGTAAAAACTTTAGATGGCATTCAGGCGAAAAAAGA
CGTTTCAGCAGCGTATATGGATAAATTCCGTGAAAAAGTAGAATTTTACGGTAATCGATATTATCCAGAACAAGCTAAAC
AAATGCGTTTATCTGGTGAAGTTCGCTTAATGGTTATCTTAAATGCGAATGGCGGTATTCGTGCAATTCGTTTAATTGAT
AGTTCAGGTCATGCCATTTTAGATGAGGCAGCTAAAGCCTCGGTTCGTAAAGCAGCACCGTATGGTGCATTCGATTCTAA
AATGAAAGATATCTCAGAGCTTCGAATTATTCGTACTTGGCGTTTTGATCCTGCTGAAGCTGAAATTGAAGTGAACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

70.732

98.288

0.695