Detailed information NTG0679539

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGV15_RS05200
• Genome accession: NZ_CP109601
• Coordinates: 1071794..1072786 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TL-14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1066794..1077786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGV15_RS05170 (OGV15_05170)	ispD	1066855..1067565 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OGV15_RS05175 (OGV15_05175)	ispF	1067565..1068044 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGV15_RS05180 (OGV15_05180)	truD	1068041..1069090 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OGV15_RS05185 (OGV15_05185)	surE	1069071..1069832 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGV15_RS05190 (OGV15_05190)	pcm	1069826..1070452 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGV15_RS05195 (OGV15_05195)	nlpD	1070637..1071731 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
OGV15_RS05200 (OGV15_05200)	rpoS	1071794..1072786 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGV15_RS05205 (OGV15_05205)	ygbN	1072880..1074244 (-)	1365	WP_049254918.1	GntP family transporter	-
OGV15_RS05210 (OGV15_05210)	ygbM	1074333..1075109 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
OGV15_RS05215 (OGV15_05215)	ygbL	1075114..1075752 (-)	639	WP_001278994.1	aldolase	-
OGV15_RS05220 (OGV15_05220)	otnK	1075749..1077011 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=679539 OGV15_RS05200 WP_000081550.1 1071794..1072786(+) (rpoS) [Escherichia coli strain TL-14]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=679539 OGV15_RS05200 WP_000081550.1 1071794..1072786(+) (rpoS) [Escherichia coli strain TL-14]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715