Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   MZN67_RS03250 Genome accession   NZ_CP096116
Coordinates   690099..690806 (-) Length   235 a.a.
NCBI ID   WP_027266061.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 685099..695806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS03235 (MZN67_03200) - 687974..688486 (-) 513 WP_038837643.1 pilus assembly protein -
  MZN67_RS03240 (MZN67_03205) - 688483..689550 (-) 1068 WP_374152203.1 PilW family protein -
  MZN67_RS03245 (MZN67_03210) pilV 689547..690086 (-) 540 WP_027266062.1 type IV pilus modification protein PilV -
  MZN67_RS03250 (MZN67_03215) fimT 690099..690806 (-) 708 WP_027266061.1 GspH/FimT family pseudopilin Machinery gene
  MZN67_RS03255 (MZN67_03220) - 691019..691879 (-) 861 WP_027219358.1 polysaccharide deacetylase family protein -
  MZN67_RS03260 (MZN67_03225) - 692056..693405 (-) 1350 WP_080275855.1 lpg0634 family Dot/Icm T4SS effector -
  MZN67_RS03265 (MZN67_03230) - 693695..695176 (+) 1482 WP_161505066.1 glycosyltransferase family 39 protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24855.47 Da        Isoelectric Point: 7.5608

>NTDB_id=679446 MZN67_RS03250 WP_027266061.1 690099..690806(-) (fimT) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MNKVITESQKFTLRNVANMLFCVESSVLPAQSNIAQKIQTKGIMYNDLCKDGFDTEAPLNSNSLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVIFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=679446 MZN67_RS03250 WP_027266061.1 690099..690806(-) (fimT) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACGGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACTCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATATTAACTCTAATCGTTCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTAGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTATTTTTGACCCACATGGGTT
ATCAACAACCCAAAGCAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCTCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAGGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(106-208)

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

97.447

100

0.974