Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   MZN67_RS00675 Genome accession   NZ_CP096116
Coordinates   150988..151680 (+) Length   230 a.a.
NCBI ID   WP_027266211.1    Uniprot ID   A0A378KA84
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 145988..156680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS00655 (MZN67_00650) - 146606..146782 (-) 177 WP_011214409.1 dodecin domain-containing protein -
  MZN67_RS00660 (MZN67_00655) - 146960..149428 (+) 2469 WP_161504712.1 oxidoreductase -
  MZN67_RS00665 (MZN67_00660) dapB 149531..150262 (-) 732 WP_027266209.1 4-hydroxy-tetrahydrodipicolinate reductase -
  MZN67_RS00670 (MZN67_00665) - 150446..150631 (-) 186 WP_027266210.1 hypothetical protein -
  MZN67_RS00675 (MZN67_00670) rocC 150988..151680 (+) 693 WP_027266211.1 ProQ/FINO family protein Regulator
  MZN67_RS00680 (MZN67_00675) - 151681..152751 (+) 1071 WP_027266212.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25775.71 Da        Isoelectric Point: 10.7292

>NTDB_id=679441 MZN67_RS00675 WP_027266211.1 150988..151680(+) (rocC) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MRKQALHPRTAVINKAQKNQSRRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLLGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=679441 MZN67_RS00675 WP_027266211.1 150988..151680(+) (rocC) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAGGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGCCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCTCGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGCCAACCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGATTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCCGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCGGAAGAGAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378KA84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

96.957

100

0.97