Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG875_RS22095 Genome accession   NZ_CP109598
Coordinates   5165605..5167338 (-) Length   577 a.a.
NCBI ID   WP_330177852.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5160605..5172338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS22085 (OG875_22090) - 5161628..5162921 (+) 1294 Protein_4351 sigma-70 family RNA polymerase sigma factor -
  OG875_RS22090 (OG875_22095) - 5163671..5165605 (-) 1935 WP_330175955.1 ABC transporter ATP-binding protein -
  OG875_RS22095 (OG875_22100) rcrP 5165605..5167338 (-) 1734 WP_330177852.1 ABC transporter ATP-binding protein Regulator
  OG875_RS22100 (OG875_22105) - 5167552..5169003 (-) 1452 WP_330175956.1 FGGY family carbohydrate kinase -
  OG875_RS22105 (OG875_22110) - 5169089..5169385 (-) 297 WP_330175957.1 YtxH domain-containing protein -
  OG875_RS22125 (OG875_22130) - 5170817..5171215 (-) 399 WP_330175958.1 hypothetical protein -
  OG875_RS22130 (OG875_22135) - 5171225..5171719 (+) 495 WP_330175959.1 hypothetical protein -
  OG875_RS22135 (OG875_22140) - 5171723..5172322 (-) 600 WP_330175960.1 transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62456.63 Da        Isoelectric Point: 6.0367

>NTDB_id=679441 OG875_RS22095 WP_330177852.1 5165605..5167338(-) (rcrP) [Streptomyces sp. NBC_01498]
MLLRLLRTHLAPYRGAIVLLVALQLLQTCASLYLPTLNADIIDNGVVTGDTGYIIRFGGLMIAVSVAQVLGQIGAVYYGA
RTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKGRFKEANTGLTEMQLATGRLMAL
MFPIVMTIVNVSSVAVVWFGAQRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PKDPVRTLRRHGHLEVRGAEFRYPGAEEPVLREVSLTARPGETTAVIGSTGSGKSTLLSLVPRLVDATAGEVLVDGEDVR
GLDPALLAGTVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEIAQAKEFVTALEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIIVMDEGRVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=679441 OG875_RS22095 WP_330177852.1 5165605..5167338(-) (rcrP) [Streptomyces sp. NBC_01498]
GTGCTGCTACGACTACTGAGAACCCATCTGGCCCCCTACCGGGGGGCCATCGTCCTGCTGGTGGCGCTCCAGCTGCTTCA
GACCTGCGCCAGCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTCACGGGGGACACGGGCTACA
TCATCCGGTTCGGCGGTCTGATGATCGCCGTCAGCGTCGCGCAGGTCCTCGGCCAGATAGGCGCCGTCTACTACGGCGCG
CGTACCGCCTCGGCCCTCGGGCGTGACGTCCGGGCCGCGATCTTCGACCGGGTGCAGAGCTTCTCCGCGCGCGAGGTCGG
CCAGTTCGGGGCGCCCTCGCTGATCACGCGGACGACCAACGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGTCGTTCA
CGCTCATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGGGGCAGGACGTGCCGCTGTCGGCGGTG
CTGCTGGCCGTCGTACCGGTTCTCGGGATCGCCGTCAGTCTGATCGTGAAACGGATGCGCCCGCTGTTCCGCACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGGGCCTTCGTGCGCGACG
AGTACGAGAAGGGCCGGTTCAAGGAGGCCAACACCGGGCTGACCGAGATGCAGTTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGATCGTGATGACGATCGTCAACGTGTCGTCGGTGGCCGTCGTCTGGTTCGGTGCCCAGCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGCGCGGAGCGCATCGAGGAAGTGCTGGACACCCGGTCCAGTGTCGTACCG
CCGAAGGACCCGGTGCGTACGCTGCGCCGGCACGGTCATCTGGAGGTGCGGGGCGCGGAGTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTCCGTGAGGTGTCCCTGACCGCGCGGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGTA
AGTCGACCCTGCTGAGCCTGGTGCCCCGGCTGGTCGACGCGACCGCCGGCGAGGTCCTGGTGGACGGCGAGGACGTACGG
GGTCTGGACCCGGCCCTGCTGGCCGGGACGGTCGGTCTGGTGCCGCAGAAGCCCTATCTGTTCTCCGGGACGGTGGCGAC
GAATCTGCGGTACGGCAAGCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCACCGCGCTGGAGGGCGGGTTGGACGCGCCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGGCAGCGCCAGCGCCTC
GCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGTGCCGCCCTGGCGCGGGAGACCGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCATCGTCATGGACGAGGGCCGGGTGGTCGGTGAAGGACGCCATCACGAACTGATGGCCGGAAAT
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.63

98.96

0.402