Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JLE48_RS16730 Genome accession   NZ_AP022482
Coordinates   3479626..3480231 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain STN0717-20     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3474626..3485231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLE48_RS16710 (STN0717ESC20_32680) aes 3474663..3475622 (+) 960 WP_000801832.1 acetyl esterase -
  JLE48_RS16715 (STN0717ESC20_32690) hemH 3475619..3476581 (-) 963 WP_001250088.1 ferrochelatase -
  JLE48_RS16720 (STN0717ESC20_32700) adk 3476817..3477461 (-) 645 WP_001220233.1 adenylate kinase -
  JLE48_RS16725 (STN0717ESC20_32710) htpG 3477642..3479516 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  JLE48_RS16730 (STN0717ESC20_32720) recR 3479626..3480231 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JLE48_RS16735 (STN0717ESC20_32730) ybaB 3480231..3480560 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JLE48_RS16740 (STN0717ESC20_32740) dnaX 3480613..3482544 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  JLE48_RS16745 (STN0717ESC20_32750) apt 3482673..3483224 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  JLE48_RS16750 (STN0717ESC20_32760) ybaN 3483377..3483754 (-) 378 WP_001188905.1 DUF454 family protein -
  JLE48_RS16755 (STN0717ESC20_32770) priC 3483824..3484351 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  JLE48_RS16760 (STN0717ESC20_32780) rsmS 3484365..3484526 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  JLE48_RS24400 - 3484579..3484677 (-) 99 Protein_3329 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67944 JLE48_RS16730 WP_001195025.1 3479626..3480231(-) (recR) [Escherichia coli strain STN0717-20]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67944 JLE48_RS16730 WP_001195025.1 3479626..3480231(-) (recR) [Escherichia coli strain STN0717-20]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443