Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG875_RS06050 Genome accession   NZ_CP109598
Coordinates   1465189..1466181 (+) Length   330 a.a.
NCBI ID   WP_330173202.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460189..1471181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS06040 (OG875_06040) - 1461595..1462965 (-) 1371 WP_330173200.1 DUF1996 domain-containing protein -
  OG875_RS06045 (OG875_06045) - 1463137..1464861 (-) 1725 WP_330173201.1 discoidin domain-containing protein -
  OG875_RS06050 (OG875_06050) cytR 1465189..1466181 (+) 993 WP_330173202.1 LacI family DNA-binding transcriptional regulator Regulator
  OG875_RS06055 (OG875_06055) - 1466249..1466431 (-) 183 Protein_1207 ATP-binding protein -
  OG875_RS06060 (OG875_06060) - 1466608..1466994 (-) 387 WP_330173203.1 WXG100 family type VII secretion target -
  OG875_RS06065 (OG875_06065) - 1467228..1467533 (+) 306 WP_330173204.1 WXG100 family type VII secretion target -
  OG875_RS06070 (OG875_06070) - 1467533..1469302 (+) 1770 WP_330173205.1 RNase A-like domain-containing protein -
  OG875_RS06075 (OG875_06075) - 1469329..1469889 (+) 561 WP_330173206.1 hypothetical protein -
  OG875_RS06080 (OG875_06080) - 1469948..1470247 (+) 300 WP_330173207.1 RNase A-like domain-containing protein -
  OG875_RS06085 (OG875_06085) - 1470261..1470917 (+) 657 WP_330173208.1 contact-dependent growth inhibition system immunity protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35256.21 Da        Isoelectric Point: 6.3631

>NTDB_id=679403 OG875_RS06050 WP_330173202.1 1465189..1466181(+) (cytR) [Streptomyces sp. NBC_01498]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVQELGYVPNGAARNLVTRRTDTIAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDQSRTRVVEYIAGGHVDGVLLVALHGTDPLPSALARQGLPVVSFNRTSAQDVP
YVALDNADGAALAVRHLLERGRRRIATITGPLELHEARERLDGYRRTLRDTGRRSIVALGEFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLRQAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGPTGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=679403 OG875_RS06050 WP_330173202.1 1465189..1466181(+) (cytR) [Streptomyces sp. NBC_01498]
ATGAAACGTCCCACTCTCGAAGTGGTCGCCGCTCGGGCGGGCGTGTCCAAATCGAGCGTCTCCCGTGTCATCAACGGAGA
GACGACGGTCGCCCCGCAGATCCGGGACGTCGTCATGCGCGCCGTACAGGAGTTGGGCTACGTGCCCAACGGGGCGGCCC
GCAATCTCGTCACCCGGCGCACGGACACGATCGCCGTGGTGGTCTCCGATCCGCCGCAGGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAGCTGGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCAGAGCCGGACCAGGGTGGTGGAGTACATCGCCGGCGGCCACGTCGACGGCGTGCTCCTGGTCGCCCTGCACGGTA
CGGATCCGCTGCCGTCCGCACTGGCCCGGCAGGGCCTGCCGGTCGTGTCCTTCAACCGCACCTCCGCGCAGGACGTCCCG
TACGTGGCCCTGGACAACGCCGACGGAGCGGCGCTGGCGGTGCGTCATCTCCTGGAACGCGGCAGGCGCCGGATCGCCAC
CATCACCGGACCGCTCGAACTGCACGAGGCACGTGAGCGTCTCGACGGCTACCGCCGGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCGCTGGGCGAGTTCACCCGCGCCTCCGGCGCCGAAGCCATGCGGCAGCTTCTGGAGGACGACCCCGAC
CTCGACGCGGTTTTCGCGGCCAACGACCTGATGGCGATCGGCGCCCTGCGCACGCTCCGCCAAGCGGGCCGACGGGTCCC
CGAGGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTACGCAGCC
CGATGGCCGACCAGGCGACGGCGGCCGTCCACCTCCTCCTCGGCCTGATCGACGGCGGCCCCACCGGGCCGGTGATCATG
CCGAACGAACTCGTGGTACGCGAATCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.503

100

0.364