Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG875_RS03175 Genome accession   NZ_CP109598
Coordinates   841450..842493 (+) Length   347 a.a.
NCBI ID   WP_330172674.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 836450..847493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS03165 (OG875_03160) - 837849..839498 (-) 1650 WP_330172672.1 ABC-F family ATP-binding cassette domain-containing protein -
  OG875_RS03170 (OG875_03165) - 839688..840986 (-) 1299 WP_330172673.1 M14 family metallocarboxypeptidase -
  OG875_RS03175 (OG875_03170) cytR 841450..842493 (+) 1044 WP_330172674.1 LacI family DNA-binding transcriptional regulator Regulator
  OG875_RS03180 (OG875_03175) - 842576..844837 (-) 2262 WP_330172675.1 glycosyl hydrolase -
  OG875_RS03185 (OG875_03180) - 845207..846094 (-) 888 WP_330172676.1 putative protein N(5)-glutamine methyltransferase -
  OG875_RS03190 (OG875_03185) - 846415..847170 (+) 756 WP_330172677.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36891.64 Da        Isoelectric Point: 5.4743

>NTDB_id=679401 OG875_RS03175 WP_330172674.1 841450..842493(+) (cytR) [Streptomyces sp. NBC_01498]
MPEQSPGSRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDKVLRAVEDLGYVPNHAARTLVTRRTGAVAVIIAEPEIR
IFSDPFFSQQIRGISKELTAHDTQLVLLLLEGPGDFGRIARYLAGGHVDGALAFSLHVDDPLPAIVRRSGTPTVYGGRPS
WTSAPGDQGVPYVDADNRGGARAAVQYLRDLGRERIAHIAGPPDQTSATDRLDGYRDVLLDADPTLITEGGFTVESGARA
MRDLLDRRPDLDAVFAANDLMASGALRVLRERGISVPGEVALVGFDDMESVAESTDPPLTTIRQDVEGQGRLMARLLLRG
LDDKDGGETRAPASVITPTTLVRRASA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=679401 OG875_RS03175 WP_330172674.1 841450..842493(+) (cytR) [Streptomyces sp. NBC_01498]
GTGCCCGAGCAGTCCCCGGGGTCCCGGCCCACGCTGGAAGCCGTCGCGGCACGTGCCGGTGTCTCCCGCGCCACCGCGTC
CCGGGTGGTCAACGGCGGCGCGGGGGTGCGGCAGCCGCTGGTCGACAAGGTGCTGCGGGCCGTGGAGGACCTGGGGTACG
TGCCCAACCACGCGGCACGCACGCTGGTCACCCGGCGGACCGGCGCGGTCGCCGTGATCATCGCCGAGCCGGAGATCCGG
ATCTTCTCGGACCCGTTCTTCTCGCAGCAGATCCGCGGCATCAGCAAGGAACTCACCGCCCACGACACCCAGTTGGTGCT
GCTCCTGCTCGAAGGTCCCGGTGATTTCGGGCGGATCGCCCGGTATCTGGCGGGCGGGCACGTCGACGGCGCCCTCGCTT
TCTCGCTGCACGTGGACGACCCGTTGCCGGCGATCGTGCGCCGGTCGGGGACCCCGACGGTGTACGGCGGCCGGCCGAGC
TGGACGTCCGCGCCGGGCGACCAGGGTGTGCCGTACGTGGACGCCGACAACCGGGGCGGGGCGCGCGCCGCCGTGCAGTA
TCTGCGCGACCTCGGGCGGGAGCGGATCGCGCACATCGCGGGCCCGCCCGACCAGACCTCCGCCACGGACCGGCTGGACG
GCTACCGCGACGTGCTGCTCGACGCGGACCCGACGCTGATCACCGAGGGCGGGTTCACGGTGGAGAGCGGCGCGCGGGCG
ATGCGGGACCTGCTGGACCGGCGCCCGGACCTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCGTCCGGCGCGCTGCG
GGTGCTGCGCGAGCGCGGGATCTCGGTGCCCGGCGAGGTGGCGCTGGTCGGGTTCGACGACATGGAGTCGGTCGCCGAGT
CCACCGATCCCCCGCTGACGACGATCCGTCAGGACGTCGAGGGCCAGGGCCGGTTGATGGCACGGCTGCTGCTGCGCGGT
CTGGACGACAAGGACGGCGGGGAGACGCGGGCACCGGCGTCCGTGATCACCCCGACCACGCTGGTGCGGCGGGCCTCGGC
CTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.613

100

0.36