Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG776_RS39745 Genome accession   NZ_CP109592
Coordinates   9295301..9295972 (+) Length   223 a.a.
NCBI ID   WP_148008440.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01689     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9290301..9300972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG776_RS39730 (OG776_39735) - 9290582..9291661 (-) 1080 WP_148008437.1 tellurite resistance/C4-dicarboxylate transporter family protein -
  OG776_RS39735 (OG776_39740) dxs 9291848..9293806 (-) 1959 WP_148008438.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OG776_RS39740 (OG776_39745) - 9294528..9294950 (+) 423 WP_329323492.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG776_RS39745 (OG776_39750) dinR/lexA 9295301..9295972 (+) 672 WP_148008440.1 transcriptional repressor LexA Regulator
  OG776_RS39750 (OG776_39755) - 9296130..9296507 (-) 378 WP_148008441.1 nuclear transport factor 2 family protein -
  OG776_RS39755 (OG776_39760) - 9296577..9297503 (-) 927 WP_148008442.1 AraC family transcriptional regulator -
  OG776_RS39760 (OG776_39765) - 9297652..9298248 (+) 597 WP_148008443.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  OG776_RS39765 (OG776_39770) - 9298281..9299705 (+) 1425 WP_148008444.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  OG776_RS39770 (OG776_39775) - 9299740..9299982 (+) 243 WP_148008445.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  OG776_RS39775 (OG776_39780) - 9299990..9300934 (-) 945 WP_329323494.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24064.41 Da        Isoelectric Point: 4.9541

>NTDB_id=679398 OG776_RS39745 WP_148008440.1 9295301..9295972(+) (dinR/lexA) [Streptomyces sp. NBC_01689]
MENSAPARRGRPPGTRNTGGELTSRQSAIVGYITETVDRQGYPPSMREIGEAVNLSSTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGSLSQAPVEVPLVGRIAAGAPLLAEEMVEDVYSLPRQIVGDGELFALTVSGDSMIDAAICDGDIVT
VRRQDSADSGDIVAALLEDEATIKVLLRKDGRVWLMPRNPAYEPIPGDDAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=679398 OG776_RS39745 WP_148008440.1 9295301..9295972(+) (dinR/lexA) [Streptomyces sp. NBC_01689]
ATGGAGAACAGCGCGCCCGCACGCCGAGGCCGTCCGCCGGGCACCCGGAACACCGGGGGAGAGCTGACGAGCCGCCAGTC
GGCCATCGTCGGCTACATCACCGAGACGGTGGACCGCCAGGGGTACCCGCCCTCGATGCGGGAGATCGGCGAGGCCGTCA
ACCTCTCCAGCACCTCTTCGGTCGCCCATCAGCTGATGGCGCTGGAGCGCAAGGGCGTCCTCTACCGCGACCCGCACCGC
CCCCGCGCCTATCGCGTACGCCCCTCGTGGGCGCCCGACCTGGGCAGCCTGAGCCAGGCGCCGGTCGAGGTACCCCTCGT
AGGGCGGATCGCGGCCGGTGCGCCCCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACTCGCTGCCCCGCCAGATCGTGG
GCGACGGCGAGCTGTTCGCCCTGACGGTCTCGGGTGACTCCATGATCGACGCGGCGATCTGCGACGGTGACATCGTGACC
GTGCGCCGCCAGGACAGCGCCGACTCCGGAGACATCGTCGCCGCGCTCCTGGAGGACGAGGCCACCATCAAGGTGCTCCT
CCGCAAGGACGGCCGTGTGTGGCTGATGCCCCGCAACCCGGCGTACGAGCCCATCCCGGGCGACGACGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.842

91.031

0.399