Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG776_RS36215 Genome accession   NZ_CP109592
Coordinates   8437350..8437649 (-) Length   99 a.a.
NCBI ID   WP_261994369.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01689     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8432350..8442649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG776_RS36195 (OG776_36190) - 8432565..8433479 (-) 915 WP_329323188.1 helix-turn-helix transcriptional regulator -
  OG776_RS36200 (OG776_36195) - 8433722..8434420 (+) 699 WP_329323189.1 type 1 glutamine amidotransferase domain-containing protein -
  OG776_RS36205 (OG776_36200) - 8434631..8435677 (+) 1047 WP_148007300.1 NAD(P)-dependent alcohol dehydrogenase -
  OG776_RS36210 (OG776_36205) - 8436476..8437267 (+) 792 WP_148007299.1 DUF2637 domain-containing protein -
  OG776_RS36215 (OG776_36210) cytR 8437350..8437649 (-) 300 WP_261994369.1 substrate-binding domain-containing protein Regulator
  OG776_RS36220 (OG776_36215) - 8437765..8438346 (-) 582 WP_148007298.1 dihydrofolate reductase family protein -
  OG776_RS36225 (OG776_36220) - 8438845..8440572 (+) 1728 WP_329323190.1 serine/threonine-protein kinase -
  OG776_RS36230 (OG776_36225) - 8440726..8442339 (-) 1614 WP_261994368.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10638.11 Da        Isoelectric Point: 4.7729

>NTDB_id=679387 OG776_RS36215 WP_261994369.1 8437350..8437649(-) (cytR) [Streptomyces sp. NBC_01689]
MLRAAPDTGAFFCGNDQIARGVADTLREEGRRVPQDIAVVGYDNRDTMDLASRPPLTTIDVNLTEIGRVAALRLLEAIDG
GTVGGVRTVPCRLILRESS

Nucleotide


Download         Length: 300 bp        

>NTDB_id=679387 OG776_RS36215 WP_261994369.1 8437350..8437649(-) (cytR) [Streptomyces sp. NBC_01689]
GTGCTGCGCGCCGCGCCCGACACCGGCGCGTTCTTCTGCGGCAACGACCAGATCGCCCGGGGCGTCGCGGACACCCTGCG
CGAGGAGGGTCGCCGGGTGCCGCAGGACATCGCCGTCGTCGGCTACGACAACCGGGACACCATGGACCTCGCGTCCCGCC
CGCCCCTGACCACGATCGACGTGAACCTCACGGAGATCGGCCGCGTCGCGGCCCTGCGCCTGCTGGAGGCGATAGACGGT
GGGACGGTCGGCGGGGTGCGGACGGTGCCGTGCCGGCTGATCCTGCGCGAGTCGTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(5-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

42.857

91.919

0.394
  cytR Vibrio parahaemolyticus RIMD 2210633

40.659

91.919

0.374