Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MZV50_RS14695 Genome accession   NZ_CP096040
Coordinates   3114759..3116141 (+) Length   460 a.a.
NCBI ID   WP_252629920.1    Uniprot ID   -
Organism   Caulobacter segnis strain RL271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3109759..3121141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZV50_RS14680 (MZV50_14675) - 3111260..3112789 (+) 1530 WP_252629916.1 replicative DNA helicase -
  MZV50_RS14685 (MZV50_14680) - 3112870..3113556 (+) 687 WP_252629917.1 MarC family protein -
  MZV50_RS14690 (MZV50_14685) alr 3113596..3114675 (+) 1080 WP_252629919.1 alanine racemase -
  MZV50_RS14695 (MZV50_14690) radA 3114759..3116141 (+) 1383 WP_252629920.1 DNA repair protein RadA Machinery gene
  MZV50_RS14700 (MZV50_14695) - 3116138..3116755 (+) 618 WP_252629921.1 CvpA family protein -
  MZV50_RS14705 (MZV50_14700) purF 3116752..3118254 (+) 1503 WP_252629922.1 amidophosphoribosyltransferase -
  MZV50_RS14710 (MZV50_14705) - 3118264..3119247 (+) 984 WP_252629923.1 bile acid:sodium symporter family protein -
  MZV50_RS14715 (MZV50_14710) - 3119296..3120051 (+) 756 WP_252629924.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47722.65 Da        Isoelectric Point: 5.5938

>NTDB_id=679344 MZV50_RS14695 WP_252629920.1 3114759..3116141(+) (radA) [Caulobacter segnis strain RL271]
MARDGAVYACQSCGAVQTKWSGQCPACQSWNTLVEEAGARPPGALATTKATRVRGLQFTGLESDTAPPPRILTGVDEFDR
VCGGGVVPGSALLIGGDPGVGKSTLLLQVCASAALRGVSCAYISGEEAVEQIRGRADRMGLAKANVSLAAETSLRDILDG
LKRDNFDLVVIDSIQTLWSDAHEAGPGTVTQVRACATELVRLAKKKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLEARCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDVALPQDCVVFGELSLSGE
VRPVSRMETRLKEAAKLGFGRALGPLAGLPEGGGALPVAGVARLTDAVRRIGDEIWTSLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=679344 MZV50_RS14695 WP_252629920.1 3114759..3116141(+) (radA) [Caulobacter segnis strain RL271]
ATGGCCCGCGACGGCGCCGTCTACGCCTGCCAGTCCTGCGGCGCGGTCCAGACCAAGTGGTCCGGCCAGTGTCCCGCCTG
CCAAAGCTGGAACACGCTGGTCGAGGAGGCCGGCGCCAGGCCGCCGGGCGCGCTGGCGACGACCAAGGCGACGCGGGTGC
GCGGCCTGCAGTTCACCGGGCTGGAGAGCGACACCGCCCCGCCCCCGCGCATCCTGACCGGCGTCGACGAGTTCGACCGG
GTCTGTGGCGGTGGCGTGGTGCCAGGCTCGGCCCTGCTGATCGGCGGCGACCCCGGCGTGGGCAAGTCGACCCTGCTGCT
GCAGGTCTGCGCCAGCGCCGCCCTGCGCGGCGTCTCCTGCGCCTACATCTCTGGCGAGGAAGCCGTCGAGCAGATCCGTG
GCCGCGCCGATCGCATGGGGCTCGCGAAAGCCAATGTCAGCCTGGCCGCCGAGACCTCGCTGCGCGACATCCTCGATGGC
CTGAAGCGCGACAACTTCGATCTCGTCGTCATTGACTCGATCCAGACCCTGTGGAGCGACGCCCACGAAGCTGGGCCCGG
CACGGTCACCCAGGTCCGCGCCTGCGCCACCGAGCTGGTCCGCCTGGCCAAGAAGAAAGGCGTGGCGATCCTGCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTGGTCGAGCACCTCGTGGACGCCGTGCTCAGCTTCGAAGGC
GAGCGTGGCTATCCGTTCCGCATTCTGCGCGGGGCCAAGAACCGCTTCGGAGCCACCGACGAGATCGGCGTCTTCGAGAT
GGGCGACGTCGGCCTTCGCGAGGTCAAGAACCCCTCGGCCCTTTTCCTGAACGAGGGCGGCGAGCGCGCGGCGGGCGCGG
CGGTGTTCGCCGGCATCGAGGGCAGCCGGCCCGTCCTGGTGGAATTCCAGGCCCTGGTCGCGCCTTCCGCGTACGGAACG
CCAAGACGCGCCGTGGTCGGATGGGATTCCGGACGCCTGGCCATGGTGTTGGCCGTACTCGAGGCCCGATGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGCCTGCGCATCACGGAACCGGCGGCGGATCTCGCGGCGGCGG
CGGCCTTGGCCTCCTCCGCCCTGGACGTCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAGCTCAGCCTGTCGGGCGAA
GTACGGCCCGTCAGCCGGATGGAGACGCGTTTGAAGGAAGCCGCGAAATTGGGATTTGGCCGGGCGCTGGGACCGCTCGC
CGGCCTGCCTGAGGGCGGCGGCGCCTTGCCCGTGGCCGGCGTGGCGCGCCTGACCGACGCGGTCCGTCGCATCGGCGACG
AGATCTGGACGAGCCTGACGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

99.783

0.487
  radA Streptococcus pneumoniae Rx1

45.514

99.348

0.452
  radA Streptococcus pneumoniae D39

45.514

99.348

0.452
  radA Streptococcus pneumoniae R6

45.514

99.348

0.452
  radA Streptococcus pneumoniae TIGR4

45.514

99.348

0.452
  radA Streptococcus mitis NCTC 12261

45.197

99.565

0.45
  radA Streptococcus mitis SK321

45.197

99.565

0.45