Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MY490_RS07880 Genome accession   NZ_CP096034
Coordinates   1652506..1654236 (+) Length   576 a.a.
NCBI ID   WP_248268715.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647506..1659236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS07855 (MY490_07855) - 1647629..1647865 (+) 237 WP_088010917.1 exodeoxyribonuclease VII small subunit -
  MY490_RS07860 (MY490_07860) - 1647888..1648754 (+) 867 WP_248269338.1 polyprenyl synthetase family protein -
  MY490_RS07865 (MY490_07865) dxs 1649115..1650995 (+) 1881 WP_248268713.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MY490_RS07870 (MY490_07870) - 1651011..1651838 (+) 828 WP_248268714.1 TlyA family RNA methyltransferase -
  MY490_RS07875 (MY490_07875) argR 1652021..1652473 (+) 453 WP_069034068.1 transcriptional regulator ArgR -
  MY490_RS07880 (MY490_07880) recN 1652506..1654236 (+) 1731 WP_248268715.1 DNA repair protein RecN Machinery gene
  MY490_RS07885 (MY490_07885) spoIVB 1654600..1655655 (+) 1056 Protein_1471 SpoIVB peptidase -
  MY490_RS07890 (MY490_07890) spo0A 1656277..1657065 (+) 789 WP_248268716.1 sporulation transcription factor Spo0A -
  MY490_RS07895 (MY490_07895) bacA 1657962..1658762 (-) 801 WP_248268717.1 undecaprenyl-diphosphate phosphatase -
  MY490_RS07900 (MY490_07900) - 1658980..1659147 (-) 168 WP_248268718.1 YycC family protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65414.38 Da        Isoelectric Point: 4.7562

>NTDB_id=679309 MY490_RS07880 WP_248268715.1 1652506..1654236(+) (recN) [Gottfriedia acidiceleris strain LH14]
MLSEIIIKNFAIIEEVSISFEKGLTVLSGETGAGKSIIIDAIGLLLGGRGSAEFVRYDTEKAEIEGLFHIENENHLIYSR
CRELGFDIEDEMIILKRDITSSGKSVCRINGKLVTTSILKEIGGLLVDIHGQHESQDLMDQEHHLPMLQQYDEKAIAPLY
TEYQKIFTNYTDLKKQLKQLTENEQQMAHRLDLIQFQLTEIQNANLQENEDDQLMEERLKISNFERIYKSLVEAYQSLSQ
DGSGLDSVRASMYSLESVTNIDNDIKEMHEGISSSYYLLEDISYRLRDSIEQMEYDPNRLNEIETRLSEISMLKKKYGHS
VADILKYAEDIEQELDTIQHKDLHIEKLQKDLDNVTIKLISAGKTLSNKRKELAIKLTADIHKELKELYMDKTTFEIMFD
VEEGQESDPILDDQHIKFKKDGFDFVEFYISTNPGEPLKPLAKVASGGELSRMFLALKSIFTKHQGITSIIFDEVDTGVS
GRVAQAIAEKIHKVSIDSQVLCITHLPQVASMADTHLFIAKLIDGNRTKTSVTPLRNDQKITEIARMIAGVEITDVTIQH
AKELIDQAASAKYQSQ

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=679309 MY490_RS07880 WP_248268715.1 1652506..1654236(+) (recN) [Gottfriedia acidiceleris strain LH14]
TTGTTATCTGAAATTATCATTAAAAATTTTGCAATCATTGAGGAAGTTTCCATTTCATTTGAAAAGGGTTTAACTGTACT
AAGTGGTGAAACAGGAGCTGGGAAATCGATTATTATTGACGCTATCGGTCTGTTACTTGGTGGTCGTGGTTCTGCAGAAT
TCGTAAGATATGATACTGAAAAAGCAGAAATTGAAGGCTTATTTCATATCGAAAATGAGAATCATCTAATTTATTCAAGA
TGCAGAGAATTAGGCTTTGACATTGAAGATGAAATGATTATTTTAAAAAGAGATATTACTTCATCTGGTAAAAGTGTATG
CCGTATCAATGGGAAATTAGTGACAACTTCTATACTTAAGGAAATTGGTGGTTTACTTGTTGATATTCATGGGCAACATG
AAAGCCAAGATTTAATGGACCAAGAACATCATTTACCGATGTTACAACAATACGATGAAAAAGCAATTGCTCCTTTGTAT
ACTGAATATCAAAAAATATTTACTAACTATACAGACTTAAAAAAACAGTTAAAGCAATTAACTGAAAATGAACAACAAAT
GGCCCATAGATTGGATTTAATACAATTTCAGCTAACAGAAATACAAAATGCGAATTTGCAAGAAAATGAAGACGATCAGT
TGATGGAAGAAAGACTTAAAATTTCTAATTTTGAACGCATTTATAAGTCTTTAGTTGAAGCGTATCAAAGTTTATCGCAG
GATGGATCAGGTTTGGATTCGGTTAGAGCGAGTATGTATTCTTTAGAGTCAGTAACAAATATTGATAATGACATTAAAGA
AATGCATGAAGGAATCAGTAGTAGCTATTACTTATTAGAGGATATATCGTATCGATTACGTGATTCCATTGAACAAATGG
AATATGATCCAAATAGATTAAACGAAATTGAAACTCGTTTAAGCGAGATTTCCATGCTAAAGAAGAAATATGGGCACAGT
GTTGCTGATATCTTAAAATATGCAGAAGATATTGAACAAGAGTTAGATACTATTCAACATAAAGATCTGCATATCGAGAA
GTTACAAAAAGACTTAGATAATGTAACAATCAAGCTAATTAGTGCTGGTAAGACTCTTTCAAATAAAAGAAAAGAATTGG
CAATCAAACTGACTGCTGATATACATAAAGAATTAAAAGAGCTCTATATGGATAAAACAACCTTTGAAATTATGTTTGAT
GTTGAAGAAGGACAAGAATCAGATCCAATTTTAGATGATCAACATATAAAGTTTAAAAAAGATGGCTTTGATTTTGTTGA
GTTTTATATTTCAACAAATCCAGGTGAGCCTTTAAAGCCATTAGCAAAGGTGGCTTCTGGTGGAGAACTTTCAAGGATGT
TCCTAGCATTAAAGAGCATTTTCACGAAGCATCAGGGGATTACATCAATCATATTTGACGAAGTTGATACAGGGGTTAGT
GGAAGAGTAGCACAAGCAATAGCAGAAAAAATACACAAGGTGTCTATAGATTCTCAAGTTCTATGTATAACTCATCTACC
ACAAGTTGCTTCTATGGCAGATACGCATTTATTTATTGCCAAATTAATTGATGGAAATCGAACGAAAACTTCTGTTACAC
CATTACGAAATGATCAAAAAATTACTGAAATTGCAAGGATGATCGCTGGAGTTGAAATTACAGATGTGACGATTCAACAC
GCTAAAGAATTGATCGACCAGGCAGCTTCTGCAAAATACCAATCTCAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.84

99.653

0.576