Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MY490_RS00575 Genome accession   NZ_CP096034
Coordinates   110717..112093 (+) Length   458 a.a.
NCBI ID   WP_248267589.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105717..117093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS00555 (MY490_00555) - 105973..106434 (+) 462 WP_129692055.1 CtsR family transcriptional regulator -
  MY490_RS00560 (MY490_00560) - 106454..107002 (+) 549 WP_248267586.1 UvrB/UvrC motif-containing protein -
  MY490_RS00565 (MY490_00565) - 107008..108075 (+) 1068 WP_248267587.1 protein arginine kinase -
  MY490_RS00570 (MY490_00570) clpC 108096..110537 (+) 2442 WP_248267588.1 ATP-dependent Clp protease ATP-binding subunit -
  MY490_RS00575 (MY490_00575) radA 110717..112093 (+) 1377 WP_248267589.1 DNA repair protein RadA Machinery gene
  MY490_RS00580 (MY490_00580) disA 112096..113169 (+) 1074 WP_129692059.1 DNA integrity scanning diadenylate cyclase DisA -
  MY490_RS00585 (MY490_00585) - 113219..114289 (+) 1071 WP_248267590.1 PIN/TRAM domain-containing protein -
  MY490_RS00590 (MY490_00590) ispD 114310..114996 (+) 687 WP_248267591.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MY490_RS00595 (MY490_00595) ispF 115008..115487 (+) 480 WP_056467343.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MY490_RS00600 (MY490_00600) gltX 115530..116990 (+) 1461 WP_248267592.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50226.99 Da        Isoelectric Point: 6.5119

>NTDB_id=679298 MY490_RS00575 WP_248267589.1 110717..112093(+) (radA) [Gottfriedia acidiceleris strain LH14]
MAKKKTKFVCQSCGYESVKWIGKCPACNEWNTMVEFIEQPASSRRLTFNTNATVEGTKPISIMEVEIGTETRIETSFDEF
NRVLGGGIVLGSLVLIGGDPGIGKSTMLLQVSSQLAKKDYKVLYVSGEESQKQIKLRAERLGVATQNLYVLSETDLSYIA
RYMDEMSPDFVVIDSIQTIYLQEVTSAPGSVSQVRECTSELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYF
EGERHHTYRILRAVKNRFGSTNETGIFEMKELGLVEVLNPSEIFLEERPFGVAGSTVVASMEGTRPVLVELQALVSPTSF
GNARRMATGIDHNRVSLIMAVLEKRMGLLLQNQDAYLKVAGGLKLDEPAVDLAVAVSIASSFQDKPTNPTDVVIGEIGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPSKNIGGWSFPEGMEIIGINTVHEALKYVLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=679298 MY490_RS00575 WP_248267589.1 110717..112093(+) (radA) [Gottfriedia acidiceleris strain LH14]
ATGGCTAAAAAGAAAACGAAATTCGTTTGTCAATCTTGTGGATATGAATCAGTTAAGTGGATTGGAAAGTGTCCCGCATG
TAACGAGTGGAACACAATGGTTGAGTTTATAGAACAGCCTGCTAGTTCAAGAAGGCTAACATTCAATACAAACGCTACAG
TAGAAGGAACGAAACCAATTTCGATCATGGAAGTGGAAATAGGTACTGAAACTCGTATCGAAACCTCCTTCGATGAGTTT
AACCGAGTTTTAGGTGGCGGTATCGTTTTAGGTTCATTAGTATTAATTGGTGGTGACCCGGGAATTGGCAAGTCGACGAT
GCTTTTACAGGTTTCCTCACAATTGGCTAAAAAGGATTATAAAGTTTTATATGTTTCAGGTGAAGAATCTCAGAAGCAAA
TAAAATTAAGAGCAGAACGACTAGGCGTCGCTACACAAAACTTATATGTTTTATCCGAGACAGATTTGTCTTATATTGCT
CGATATATGGATGAGATGTCTCCTGATTTTGTTGTAATTGATTCGATTCAAACAATCTATTTACAAGAAGTAACATCTGC
TCCTGGTAGTGTTTCACAAGTAAGAGAGTGTACTTCAGAATTAATGAAAATCGCTAAGACAAAAGGTATCCCAATCTTTA
TAGTAGGGCATGTGACAAAAGAGGGATCAATTGCTGGCCCACGTTTACTGGAACATATGGTTGATGCAGTGTTATATTTT
GAGGGGGAGAGACATCATACATATCGAATATTAAGGGCAGTTAAAAATCGTTTTGGTTCTACTAATGAAACGGGTATTTT
TGAAATGAAAGAGTTAGGATTAGTGGAAGTGCTGAATCCATCGGAAATTTTCTTAGAAGAGAGACCTTTTGGAGTAGCAG
GTTCAACAGTTGTTGCTTCTATGGAAGGTACTAGACCTGTATTAGTTGAACTACAAGCACTTGTCTCTCCAACGAGCTTT
GGAAATGCAAGGCGAATGGCAACTGGTATAGATCATAATAGAGTATCGTTAATTATGGCTGTATTAGAAAAGAGAATGGG
CCTCTTATTACAAAATCAAGATGCTTATTTAAAGGTTGCTGGAGGACTGAAGTTAGATGAGCCAGCTGTAGACTTAGCTG
TTGCAGTAAGTATAGCATCAAGCTTTCAAGATAAACCTACTAATCCAACAGATGTAGTAATTGGTGAGATCGGTTTAACA
GGAGAAGTTCGAAGGGTATCTAGAATAGAGCAAAGAGTACAAGAAGCAGCTAAACTTGGATTTAAAAGAGCAATAATTCC
ATCAAAAAATATTGGAGGATGGAGTTTTCCTGAAGGAATGGAAATAATAGGTATTAATACGGTACATGAAGCATTAAAAT
ACGTGTTAGGAGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.043

100

0.734
  radA Streptococcus pneumoniae Rx1

62.363

99.782

0.622
  radA Streptococcus pneumoniae D39

62.363

99.782

0.622
  radA Streptococcus pneumoniae R6

62.363

99.782

0.622
  radA Streptococcus pneumoniae TIGR4

62.363

99.782

0.622
  radA Streptococcus mitis NCTC 12261

62.363

99.782

0.622
  radA Streptococcus mitis SK321

62.363

99.782

0.622