Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG467_RS26520 Genome accession   NZ_CP109589
Coordinates   5873147..5874151 (+) Length   334 a.a.
NCBI ID   WP_100596094.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5868147..5879151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS26495 (OG467_26555) - 5868677..5869348 (+) 672 WP_329572941.1 TetR/AcrR family transcriptional regulator -
  OG467_RS26500 (OG467_26560) - 5869502..5870986 (+) 1485 WP_329572942.1 MFS transporter -
  OG467_RS26505 (OG467_26565) - 5871018..5871530 (-) 513 WP_329572943.1 MarR family transcriptional regulator -
  OG467_RS26510 (OG467_26570) - 5871638..5872405 (+) 768 WP_329572944.1 class III extradiol ring-cleavage dioxygenase -
  OG467_RS26515 (OG467_26575) - 5872417..5872926 (-) 510 WP_329581878.1 N-acetyltransferase family protein -
  OG467_RS26520 (OG467_26580) rpoS 5873147..5874151 (+) 1005 WP_100596094.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG467_RS26525 (OG467_26585) - 5874193..5875188 (-) 996 WP_329572945.1 WYL domain-containing protein -
  OG467_RS26530 (OG467_26590) - 5875342..5876844 (+) 1503 WP_329572946.1 MFS transporter -
  OG467_RS26535 (OG467_26595) - 5876909..5878168 (-) 1260 WP_329572947.1 extracellular solute-binding protein -
  OG467_RS26540 (OG467_26600) - 5878241..5878948 (+) 708 WP_329572948.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37217.06 Da        Isoelectric Point: 5.1535

>NTDB_id=679273 OG467_RS26520 WP_100596094.1 5873147..5874151(+) (rpoS) [Streptomyces sp. NBC_01361]
MATRAVARRKSAASGETDGARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEAESEAA
GKASREELEALVAAGERAKDVFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQ
AITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPEEIAAELDSKPARVVDVLDWARDPVSLNMPVDDEGDT
QFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLE
LKKLARDTGFDAAA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=679273 OG467_RS26520 WP_100596094.1 5873147..5874151(+) (rpoS) [Streptomyces sp. NBC_01361]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCGCCTCCGGCGAGACCGACGGCGCACGCAGTGTTCGCGCCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTGGACGCCGCCAAGG
AAGTCGAACTTTCCCAGACCATCGAGGCGGGCGTGTATGCCCGGCAGATCCTCGACGGCGAGGCGGAGAGCGAAGCCGCG
GGCAAGGCGTCCCGCGAGGAGCTCGAAGCGCTCGTCGCCGCGGGTGAGCGGGCCAAGGACGTCTTCATCAAGTCCAATCT
GCGCCTGGTCGTGGCCGTCGCGCGCCGCTACCCGAGGAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGGAACGCGG
GCCTGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCAGGCAG
GCCATCACGCGCTCGATAGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCG
GCGCGTGCAGCGCGAGTTCAACCGGAAGAACGGGCGGGACCCCGAGCCCGAGGAGATCGCCGCCGAGCTCGACTCCAAGC
CCGCTCGCGTCGTCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGAGGGCGATACC
CAGTTCGGTGACCTTCTGGAGGACACGTCCGCCGTGTCGCCCGAGCAGTCCGTCCTCACGCTGCTGCGCAGCGAGGAGCT
GGATGACCTCATCGGCCGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGGATCGACGACGGCCGTGAGC
GCACGCTCACCGAGGTCGGCAAGGAGCACGGGCTGACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCGCTTCTTGAG
CTGAAGAAGCTGGCTCGGGACACCGGGTTCGATGCCGCCGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(102-171)

Sigma-70, region 4 (Sigma70_r4)

(271-323)

Sigma-70 region 3 (Sigma70_r3)

(181-257)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.532

90.12

0.365