Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MY525_RS15420 Genome accession   NZ_CP096018
Coordinates   3391751..3393115 (+) Length   454 a.a.
NCBI ID   WP_250656753.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12817     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3386751..3398115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY525_RS15395 hemE 3386989..3388056 (+) 1068 WP_250656751.1 uroporphyrinogen decarboxylase -
  MY525_RS15400 - 3388424..3388642 (+) 219 WP_250656339.1 hypothetical protein -
  MY525_RS15405 - 3388710..3388880 (+) 171 WP_250656340.1 hypothetical protein -
  MY525_RS15410 ltrA 3388906..3390171 (+) 1266 WP_250656341.1 group II intron reverse transcriptase/maturase -
  MY525_RS15415 - 3390267..3391544 (-) 1278 WP_250656752.1 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase -
  MY525_RS15420 radA 3391751..3393115 (+) 1365 WP_250656753.1 DNA repair protein RadA Machinery gene
  MY525_RS15425 - 3393121..3393516 (-) 396 WP_250656754.1 PilZ domain-containing protein -
  MY525_RS15430 ettA 3393652..3395340 (-) 1689 WP_250656755.1 energy-dependent translational throttle protein EttA -
  MY525_RS15435 - 3395510..3395836 (-) 327 WP_250656756.1 YnfA family protein -
  MY525_RS15440 arsJ 3395833..3397068 (-) 1236 WP_370301541.1 organoarsenical effux MFS transporter ArsJ -
  MY525_RS15445 - 3397076..3398086 (-) 1011 WP_250656758.1 ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48647.09 Da        Isoelectric Point: 6.5862

>NTDB_id=679203 MY525_RS15420 WP_250656753.1 3391751..3393115(+) (radA) [Alkalimarinus coralli strain SCSIO 12817]
MAKAKTAYVCTDCGAEYGKWQGQCSECHEWNTISEFKVGKASTTRGARFEGYAGKLSEVQSLDHINLEEQSRFTSGIGEF
DRVLGGGLVPGSAILIGGSPGAGKSTLLLQTMCFLAGSMPALYITGEESLQQVAMRATRLGIKTNDLQMLSETNVDAIIA
AAEKMKPKVLVVDSIQVVHMEGIESAPGSVSQVRESAAMLTRYAKQTGTVLFLVGHVTKEGSIAGPKVLEHMIDCSIMLD
GSDDSRFRTLRGIKNRFGAVNELGIFAMLENGLREVTNPSAIFLNRSDEQMPGSGVTVIWEGTRPLLIELQALVDESQMN
YPKRVAIGLDQNRLAMLLAVLHRHGGLHCGDQDVFVNVVGGVRVSETSADLAALLAVVSSFRSISLPQDMVIIGEVGLSG
EIRPVPSGQERVLEAAKHGFKRAIVPKANAPKKPIDGMEVIAVKKLSEALNIIG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=679203 MY525_RS15420 WP_250656753.1 3391751..3393115(+) (radA) [Alkalimarinus coralli strain SCSIO 12817]
ATGGCAAAAGCAAAGACCGCCTATGTATGTACTGACTGTGGTGCTGAATATGGCAAGTGGCAAGGACAATGTTCAGAGTG
CCACGAGTGGAACACGATAAGTGAATTTAAAGTGGGTAAGGCTAGCACGACGAGAGGGGCACGCTTTGAAGGGTATGCCG
GTAAGCTCTCTGAAGTGCAATCCCTCGACCACATAAACCTCGAAGAGCAGTCTCGTTTTACCTCAGGAATTGGAGAGTTT
GACCGGGTGTTAGGAGGGGGGCTGGTGCCGGGCTCCGCTATTTTAATTGGAGGCTCGCCGGGCGCAGGGAAGAGCACGCT
ACTGTTGCAGACGATGTGTTTTCTAGCCGGCAGTATGCCTGCGCTGTATATCACGGGTGAAGAATCTTTACAGCAGGTCG
CCATGCGTGCCACGCGGCTGGGAATAAAGACCAATGACTTGCAGATGCTGTCAGAGACCAATGTTGATGCCATTATTGCT
GCTGCAGAAAAGATGAAGCCAAAAGTGCTGGTGGTTGATAGTATTCAGGTCGTGCATATGGAAGGGATCGAGTCAGCCCC
CGGCAGCGTTTCTCAGGTGCGCGAAAGTGCGGCGATGTTGACCCGTTATGCCAAGCAGACCGGAACAGTATTGTTTCTGG
TGGGGCATGTGACAAAAGAAGGTTCGATTGCTGGGCCAAAGGTTCTGGAGCATATGATTGACTGCTCGATTATGCTCGAT
GGCTCCGATGATAGCCGGTTTCGAACATTGCGTGGCATTAAAAACCGATTTGGTGCTGTGAATGAGTTGGGGATTTTTGC
GATGCTTGAGAATGGGCTTAGGGAGGTGACCAACCCTAGTGCAATCTTTCTCAATCGGTCTGATGAGCAGATGCCGGGTA
GCGGTGTAACGGTAATTTGGGAGGGCACCCGGCCATTGCTGATTGAACTGCAGGCGTTGGTTGATGAAAGCCAAATGAAT
TACCCAAAGCGAGTCGCTATAGGGCTGGATCAGAACCGGCTGGCAATGTTATTGGCAGTATTACATCGTCATGGCGGGTT
GCATTGCGGTGATCAGGATGTATTTGTCAATGTCGTTGGGGGCGTTAGGGTGTCCGAAACCAGTGCTGACTTGGCTGCAT
TGCTGGCTGTGGTATCAAGCTTTAGAAGTATATCTCTTCCACAGGATATGGTTATCATTGGCGAAGTGGGGTTGTCTGGA
GAAATAAGGCCCGTGCCGAGTGGTCAGGAGCGGGTCTTGGAAGCGGCCAAGCATGGTTTCAAGAGGGCCATCGTTCCTAA
AGCAAATGCGCCAAAAAAACCGATCGACGGGATGGAAGTGATTGCGGTAAAAAAACTATCTGAGGCATTAAATATTATCG
GCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

99.78

0.487
  radA Streptococcus mitis NCTC 12261

41.63

100

0.416
  radA Streptococcus pneumoniae Rx1

41.538

100

0.416
  radA Streptococcus pneumoniae TIGR4

41.538

100

0.416
  radA Streptococcus pneumoniae D39

41.538

100

0.416
  radA Streptococcus pneumoniae R6

41.538

100

0.416
  radA Streptococcus mitis SK321

41.685

99.339

0.414