Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MX621_RS10520 Genome accession   NZ_CP095923
Coordinates   2236889..2237524 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain AR19438     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2231889..2242524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX621_RS10505 (MX621_10505) - 2232595..2233839 (+) 1245 WP_003109473.1 lipoprotein-releasing ABC transporter permease subunit -
  MX621_RS10510 (MX621_10510) - 2233927..2234460 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  MX621_RS10515 (MX621_10515) comA 2234591..2236816 (+) 2226 WP_009877613.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MX621_RS10520 (MX621_10520) exbB 2236889..2237524 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MX621_RS10525 (MX621_10525) - 2237521..2237961 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  MX621_RS10530 (MX621_10530) lpxK 2237961..2238959 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  MX621_RS10535 (MX621_10535) - 2238997..2239182 (+) 186 WP_003091157.1 Trm112 family protein -
  MX621_RS10540 (MX621_10540) kdsB 2239182..2239946 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MX621_RS10545 (MX621_10545) - 2239946..2240410 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  MX621_RS10550 (MX621_10550) murB 2240407..2241426 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=679108 MX621_RS10520 WP_003091163.1 2236889..2237524(+) (exbB) [Pseudomonas aeruginosa strain AR19438]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=679108 MX621_RS10520 WP_003091163.1 2236889..2237524(+) (exbB) [Pseudomonas aeruginosa strain AR19438]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81