Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG465_RS21750 Genome accession   NZ_CP109580
Coordinates   4608178..4609155 (-) Length   325 a.a.
NCBI ID   WP_405787561.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01367     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4603178..4614155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG465_RS21735 (OG465_21685) - 4603919..4605310 (+) 1392 WP_405790735.1 cellulose binding domain-containing protein -
  OG465_RS21740 (OG465_21690) - 4605420..4606982 (-) 1563 WP_328790069.1 MFS transporter -
  OG465_RS21745 (OG465_21695) - 4607045..4608001 (+) 957 WP_328790068.1 YafY family protein -
  OG465_RS21750 (OG465_21700) rpoS 4608178..4609155 (-) 978 WP_405787561.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG465_RS21755 (OG465_21705) - 4609360..4609890 (+) 531 WP_405787563.1 GNAT family N-acetyltransferase -
  OG465_RS21760 (OG465_21710) - 4609994..4610638 (+) 645 WP_405787565.1 Uma2 family endonuclease -
  OG465_RS21765 (OG465_21715) - 4610635..4611396 (-) 762 WP_405790737.1 dioxygenase -
  OG465_RS21770 (OG465_21720) - 4611515..4613047 (-) 1533 WP_405787567.1 MFS transporter -
  OG465_RS21775 (OG465_21725) - 4613110..4613826 (-) 717 WP_405787569.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36537.26 Da        Isoelectric Point: 4.9609

>NTDB_id=679089 OG465_RS21750 WP_405787561.1 4608178..4609155(-) (rpoS) [Streptomyces sp. NBC_01367]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDSTIEREGDTPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMAVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDKRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=679089 OG465_RS21750 WP_405787561.1 4608178..4609155(-) (rpoS) [Streptomyces sp. NBC_01367]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGTGACCT
GGTCGGCATGTATCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAAGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACAGCACGATAGAGCGTGAAGGGGACACCCCGGCCCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGCGAGCGGGCCAAGGAAGTCTTCATCCGCTCGAACCTGCGCCTCGTCGTGGCCGTGGCCCGGCG
CTATCCGCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTCCGCGCGGTCGAAAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGGCAGGCGATCACCCGGTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGGGAATTCAACCGGGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCCACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGGCGGTCGACGACGACGGCGACACCCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTTTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACAA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACGCTGACGGAGGTCGGCAAGCAGC
ACGGACTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGCGGATGGCGCGTGACACCGGC
TTCGACGCCGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

92.308

0.369