Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MU858_RS06435 Genome accession   NZ_CP095874
Coordinates   1236125..1236448 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus sp. PGP15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231125..1241448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU858_RS06405 (MU858_06405) - 1231177..1231404 (+) 228 WP_000251865.1 hypothetical protein -
  MU858_RS06410 (MU858_06410) - 1231560..1232846 (+) 1287 WP_157409482.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MU858_RS06415 (MU858_06415) - 1233038..1233607 (+) 570 WP_157409483.1 signal peptidase I -
  MU858_RS06420 (MU858_06420) - 1233670..1234257 (+) 588 WP_048526763.1 CalY family protein -
  MU858_RS06425 (MU858_06425) - 1234377..1235183 (+) 807 WP_157409484.1 DUF4047 domain-containing protein -
  MU858_RS06430 (MU858_06430) calY 1235457..1236050 (+) 594 WP_048526765.1 biofilm matrix protein CalY -
  MU858_RS06435 (MU858_06435) sinR 1236125..1236448 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  MU858_RS06440 (MU858_06440) - 1236528..1236662 (-) 135 WP_048526766.1 anti-repressor SinI family protein -
  MU858_RS06445 (MU858_06445) inhA1 1237006..1239393 (+) 2388 WP_071758946.1 M6 family metalloprotease immune inhibitor InhA1 -
  MU858_RS06450 (MU858_06450) - 1239547..1240932 (+) 1386 WP_282189813.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=678998 MU858_RS06435 WP_000578882.1 1236125..1236448(-) (sinR) [Bacillus sp. PGP15]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=678998 MU858_RS06435 WP_000578882.1 1236125..1236448(-) (sinR) [Bacillus sp. PGP15]
ATGATTGGAGAACGTATAAAACGCCTGCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692