Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG571_RS00960 Genome accession   NZ_CP109575
Coordinates   192441..192596 (+) Length   51 a.a.
NCBI ID   WP_331765483.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01369     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 187441..197596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG571_RS00925 (OG571_00925) - 187722..188924 (+) 1203 WP_331754403.1 IS110 family transposase -
  OG571_RS00930 (OG571_00930) - 189031..189708 (+) 678 WP_331754004.1 class I SAM-dependent methyltransferase -
  OG571_RS00935 (OG571_00935) - 190242..190394 (+) 153 Protein_186 DUF402 domain-containing protein -
  OG571_RS00940 (OG571_00940) - 190516..190668 (+) 153 WP_331765480.1 hypothetical protein -
  OG571_RS00945 (OG571_00945) - 190977..191879 (-) 903 WP_331765481.1 hypothetical protein -
  OG571_RS00950 (OG571_00950) - 191947..192126 (+) 180 WP_331765482.1 hypothetical protein -
  OG571_RS00955 (OG571_00955) - 192202..192444 (+) 243 WP_331754405.1 hypothetical protein -
  OG571_RS00960 (OG571_00960) dinR/lexA 192441..192596 (+) 156 WP_331765483.1 hypothetical protein Regulator
  OG571_RS00965 (OG571_00965) - 192840..194810 (+) 1971 WP_331765484.1 AAA family ATPase -
  OG571_RS00970 (OG571_00970) - 195004..195894 (+) 891 WP_331754022.1 hypothetical protein -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5585.34 Da        Isoelectric Point: 9.1503

>NTDB_id=678975 OG571_RS00960 WP_331765483.1 192441..192596(+) (dinR/lexA) [Streptomyces sp. NBC_01369]
MSTDAPIDRQVQILRVIRNWIADHGEGPSIRQIGERVGLSSSSSVAWKPVA

Nucleotide


Download         Length: 156 bp        

>NTDB_id=678975 OG571_RS00960 WP_331765483.1 192441..192596(+) (dinR/lexA) [Streptomyces sp. NBC_01369]
ATGAGTACCGACGCCCCGATCGATCGGCAGGTCCAGATTCTGCGGGTGATCAGAAACTGGATCGCGGATCACGGCGAGGG
GCCCTCGATCCGCCAGATCGGTGAACGGGTCGGCCTGTCCAGCAGCAGCTCGGTCGCCTGGAAGCCCGTGGCCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

54.054

72.549

0.392