Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG571_RS00915 Genome accession   NZ_CP109575
Coordinates   185976..186200 (+) Length   74 a.a.
NCBI ID   WP_331753999.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01369     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 180976..191200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG571_RS00895 (OG571_00895) - 181528..181851 (-) 324 WP_331765476.1 hypothetical protein -
  OG571_RS00900 (OG571_00900) - 182395..183378 (+) 984 WP_405850349.1 protein NO VEIN domain-containing protein -
  OG571_RS00905 (OG571_00905) - 183611..185497 (+) 1887 WP_331765478.1 DUF2075 domain-containing protein -
  OG571_RS00910 (OG571_00910) - 185700..185909 (-) 210 WP_405850351.1 helicase associated domain-containing protein -
  OG571_RS00915 (OG571_00915) dinR/lexA 185976..186200 (+) 225 WP_331753999.1 hypothetical protein Regulator
  OG571_RS00920 (OG571_00920) - 186517..187236 (-) 720 WP_405850353.1 IS6 family transposase -
  OG571_RS00925 (OG571_00925) - 187722..188924 (+) 1203 WP_331754403.1 IS110 family transposase -
  OG571_RS00930 (OG571_00930) - 189031..189708 (+) 678 WP_331754004.1 class I SAM-dependent methyltransferase -
  OG571_RS00935 (OG571_00935) - 190242..190394 (+) 153 Protein_186 DUF402 domain-containing protein -
  OG571_RS00940 (OG571_00940) - 190516..190668 (+) 153 WP_331765480.1 hypothetical protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 8288.43 Da        Isoelectric Point: 12.0252

>NTDB_id=678974 OG571_RS00915 WP_331753999.1 185976..186200(+) (dinR/lexA) [Streptomyces sp. NBC_01369]
MTRPDALSSRREAVLRAIRAWIAETGESPSVRQIGEWVGLPSTSSVAYQLGRLEARGLISRTGHHRWRSCRLST

Nucleotide


Download         Length: 225 bp        

>NTDB_id=678974 OG571_RS00915 WP_331753999.1 185976..186200(+) (dinR/lexA) [Streptomyces sp. NBC_01369]
ATGACCCGGCCCGATGCCTTGTCCTCCCGGCGGGAAGCGGTCCTGCGTGCGATCCGGGCCTGGATCGCGGAGACCGGTGA
GAGCCCGTCCGTCCGGCAGATCGGCGAATGGGTCGGCCTGCCCAGCACCAGCTCCGTCGCCTACCAGCTCGGCCGTCTCG
AAGCTCGGGGACTGATCAGCCGCACCGGCCACCACCGCTGGCGTTCCTGCCGCCTGAGCACCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(6-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

52.727

74.324

0.392