Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MYA84_RS14830 Genome accession   NZ_CP095872
Coordinates   2994928..2995254 (-) Length   108 a.a.
NCBI ID   WP_048882239.1    Uniprot ID   A0A0J8SPP8
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2989928..3000254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS14810 (MYA84_14765) - 2990125..2990778 (-) 654 WP_048882242.1 FHA domain-containing protein -
  MYA84_RS14815 (MYA84_14770) gspD 2990843..2993095 (-) 2253 WP_048882241.1 type II secretion system secretin GspD -
  MYA84_RS14820 (MYA84_14775) - 2993134..2994000 (-) 867 WP_048882240.1 type II secretion system protein N -
  MYA84_RS14825 (MYA84_14780) gspN 2994000..2994743 (-) 744 WP_004890585.1 type II secretion system protein N -
  MYA84_RS14830 (MYA84_14785) hns 2994928..2995254 (-) 327 WP_048882239.1 H-NS family nucleoid-associated regulatory protein Regulator
  MYA84_RS14835 (MYA84_14790) - 2995397..2995825 (-) 429 WP_048882238.1 acyl-CoA thioesterase -
  MYA84_RS14840 (MYA84_14795) - 2995836..2997029 (-) 1194 WP_184103578.1 heme biosynthesis HemY N-terminal domain-containing protein -
  MYA84_RS14845 (MYA84_14800) - 2997036..2997863 (-) 828 WP_048882236.1 hypothetical protein -
  MYA84_RS14850 (MYA84_14805) - 2997860..2998639 (-) 780 WP_048882235.1 uroporphyrinogen-III synthase -
  MYA84_RS14855 (MYA84_14810) hemC 2998645..2999565 (-) 921 WP_048882234.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12348.09 Da        Isoelectric Point: 5.3249

>NTDB_id=678967 MYA84_RS14830 WP_048882239.1 2994928..2995254(-) (hns) [Acinetobacter schindleri strain H4-3-C1]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLNIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=678967 MYA84_RS14830 WP_048882239.1 2994928..2995254(-) (hns) [Acinetobacter schindleri strain H4-3-C1]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAACATTGCAGAAAAAGTAGGTATGAGCATTGAGCAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACCTGGACGGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCGGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8SPP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815