Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG512_RS40945 Genome accession   NZ_CP109565
Coordinates   8848191..8850560 (-) Length   789 a.a.
NCBI ID   WP_266932933.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8843191..8855560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS40920 (OG512_40840) - 8843462..8843965 (-) 504 WP_266556234.1 gas vesicle structural protein GvpA -
  OG512_RS40925 (OG512_40845) - 8844003..8844326 (-) 324 WP_266556232.1 gas vesicle protein -
  OG512_RS40930 (OG512_40850) - 8844657..8845427 (+) 771 WP_405784604.1 GNAT family N-acetyltransferase -
  OG512_RS40935 (OG512_40855) - 8845427..8846239 (+) 813 WP_385879945.1 lysophospholipid acyltransferase family protein -
  OG512_RS40940 (OG512_40860) - 8846381..8848036 (+) 1656 WP_266931448.1 IS1182 family transposase -
  OG512_RS40945 (OG512_40865) uvrA 8848191..8850560 (-) 2370 WP_266932933.1 excinuclease ABC subunit UvrA Machinery gene
  OG512_RS40950 (OG512_40870) - 8850628..8851635 (-) 1008 WP_266556224.1 LLM class flavin-dependent oxidoreductase -
  OG512_RS40955 (OG512_40875) - 8851683..8852183 (+) 501 WP_266556222.1 HAD family acid phosphatase -
  OG512_RS40960 (OG512_40880) - 8852244..8852459 (-) 216 WP_266556220.1 dodecin -
  OG512_RS40965 (OG512_40885) - 8852673..8853977 (+) 1305 WP_266556212.1 extracellular solute-binding protein -
  OG512_RS40970 (OG512_40890) egtD 8854005..8854967 (-) 963 WP_266556210.1 L-histidine N(alpha)-methyltransferase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 84039.34 Da        Isoelectric Point: 6.8122

>NTDB_id=678965 OG512_RS40945 WP_266932933.1 8848191..8850560(-) (uvrA) [Streptomyces sp. NBC_01378]
MHEPPHDPFVRVRGACEHNLRAVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVG
EITGLPPAVSLQQRRSSPTSRSSVGTVTTLSNSLRMLFSRAGDYPPGADPLDSDAFSPNTAAGACPECHGLGVVHRTTEA
LLVPDPSLSLREGAIAAWPGAWQGKNLRDVLDALGYDVDRPWRELPQDERDWILFTDDQPVVTVHPVRDAGRIQRPYQGT
YMSANRYVLKTFADSKSQTLRTRAERFLDSAPCPVCGGARLRAESLAVTFGGRTIADLAHLPLADLAKIFDAPGDASETA
RVLTGDLLARIATVTELGLGYLSLDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLTVLDRLKA
AGNSVFVVEHHMDVVRKADWLVDVGPLAGEHGGRVLHSGPVADLASVADSATARFLFGRERMPVRTVREPRGRLKVGPVT
RHNLRGVSVDVPLSTFTAVTGVSGSGKSTLIGSITEELEGVGRLVVVDQKPIGRTPRSNLATYTGLFDVVRKVFAATDEA
KARKYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNAATLEVTYRGRTIAEVLDLTVESAAEFFA
DTPAVARSLGTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRGRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVDA
GHTVVVVEHDMAVVAGADWVIDLGPGGGDAGGRIVAAGPPTEVARASGSATAPYLARAFPPGAPLDARP

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=678965 OG512_RS40945 WP_266932933.1 8848191..8850560(-) (uvrA) [Streptomyces sp. NBC_01378]
ATGCACGAGCCCCCTCACGATCCGTTCGTCCGCGTGCGGGGTGCCTGTGAGCACAATCTGCGGGCCGTCGACGTGGACAT
CCCGCGCGACGTGCTCGCCGTGTTCACGGGGGTCTCCGGTTCCGGGAAGTCCTCTCTCGCCTTCGGGACGATCTACGCCG
AGGCGCAGCGCCGCTACTTCGAGTCCGTGGCCCCGTACGCGCGCCGTCTCATCCACCAGGTGGGCGCCCCCAAGGTCGGC
GAGATCACCGGCCTTCCGCCGGCCGTCTCGCTGCAGCAGCGCCGCTCCTCCCCCACGTCCCGCTCCTCCGTCGGCACCGT
CACCACGCTCTCGAACTCATTGCGCATGCTGTTCTCGCGGGCGGGCGACTACCCGCCCGGCGCGGACCCGCTCGACTCGG
ACGCCTTCTCGCCGAACACGGCGGCCGGGGCGTGCCCCGAGTGTCACGGGCTCGGCGTGGTGCACCGCACGACGGAGGCG
CTGCTCGTGCCCGACCCGTCCCTCTCCCTCCGCGAGGGCGCGATCGCCGCGTGGCCGGGTGCCTGGCAGGGCAAGAACCT
GCGCGACGTCCTGGACGCGCTCGGGTACGACGTCGACCGGCCGTGGCGTGAACTGCCGCAGGACGAACGGGACTGGATCC
TGTTCACGGACGACCAGCCCGTCGTCACCGTGCACCCCGTGCGGGACGCGGGCCGGATCCAACGCCCCTACCAGGGCACG
TACATGAGCGCGAACCGCTACGTCCTCAAGACGTTCGCGGACTCCAAGAGCCAGACGCTCCGCACGAGGGCCGAGCGGTT
CCTCGACAGCGCGCCGTGTCCGGTGTGCGGCGGGGCGCGGCTGCGGGCCGAGTCGCTCGCGGTGACGTTCGGCGGCCGCA
CCATCGCGGATCTCGCGCATCTGCCGCTCGCGGACCTCGCGAAGATCTTCGACGCCCCCGGCGACGCCTCGGAGACCGCG
CGGGTCCTCACCGGCGATCTGCTGGCCCGCATCGCCACCGTCACCGAACTCGGCCTCGGCTACCTCAGCCTGGACCGCGC
CACACCCACGCTCTCCGCGGGCGAGCTCCAACGCCTGCGCCTGGCAACTCAGTTGCGCTCCGGCCTCTTCGGCGTGGTCT
ACGTGCTCGACGAGCCGTCGGCGGGCCTGCACCCGGCCGACACGGAGTCGCTCCTCACGGTCCTCGACCGGCTCAAGGCG
GCCGGCAACTCGGTGTTCGTCGTCGAGCACCACATGGATGTCGTCCGCAAGGCCGACTGGCTCGTCGACGTCGGCCCGCT
CGCGGGCGAGCACGGCGGCCGTGTCCTGCACAGCGGTCCCGTCGCGGATCTGGCGTCCGTCGCGGACTCGGCGACGGCGC
GCTTCCTCTTCGGCCGCGAGAGGATGCCCGTGCGCACGGTGCGGGAGCCGCGCGGCCGGCTGAAGGTCGGCCCGGTGACC
CGGCACAATCTGCGCGGCGTGTCGGTGGACGTGCCGCTGTCCACTTTCACGGCCGTCACCGGTGTCTCAGGGTCCGGGAA
GTCCACGCTCATCGGCTCGATCACGGAGGAACTGGAGGGCGTGGGCCGCCTCGTGGTCGTCGACCAGAAGCCGATCGGGC
GCACGCCGCGCTCCAACCTCGCCACGTACACGGGCCTGTTCGACGTCGTACGGAAGGTGTTCGCGGCCACCGACGAGGCG
AAGGCCCGCAAGTACGGCGTGGGGCGGTTCTCCTTCAACGTGGCCGGGGGCCGCTGCGAGACCTGCCAGGGCGAGGGCTT
CGTCAGCGTCGAGCTCCTCTTCCTGCCGAGCACGTACGCGCCCTGCCCGGACTGCGGCGGCGCGCGCTACAACGCCGCGA
CGCTGGAAGTCACCTACCGGGGGCGGACGATCGCCGAGGTCCTCGATCTGACGGTGGAGAGCGCGGCGGAGTTCTTCGCG
GACACGCCGGCCGTGGCGCGCAGCCTCGGCACGCTGCTCGACGTGGGGCTCGGCTATCTGCGGCTCGGGCAGCCGGCCAC
CGAGCTGTCCGGCGGGGAGGCCCAACGCATCAAGCTGGCGAGCGAGTTGCAGCGCGGGCGCCGCGGTCACACGTTGTACC
TGCTCGACGAGCCGACGACCGGTCTTCATCCGGCCGATGTCGAGGTTCTGATGCGGCAGTTGCACGGGCTCGTCGACGCC
GGGCACACCGTGGTGGTCGTCGAGCACGACATGGCGGTGGTCGCGGGCGCGGACTGGGTGATCGATCTGGGGCCGGGCGG
CGGCGACGCGGGTGGTCGGATCGTCGCCGCGGGGCCGCCGACGGAGGTGGCGCGGGCGAGCGGGAGCGCTACGGCTCCCT
ATCTCGCCCGTGCCTTCCCGCCAGGCGCTCCGTTGGACGCGCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(484-699)

UvrA DNA-binding domain (UvrA_DNA-bind)

(160-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.815

85.551

0.366
  uvrA Streptococcus pneumoniae TIGR4

42.815

85.551

0.366
  uvrA Streptococcus pneumoniae D39

42.815

85.551

0.366