Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MYA84_RS14045 Genome accession   NZ_CP095872
Coordinates   2815807..2818044 (+) Length   745 a.a.
NCBI ID   WP_034424751.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2816482..2870733 2815807..2818044 flank -1562


Gene organization within MGE regions


Location: 2815807..2870733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS14045 (MYA84_14000) priA 2815807..2818044 (+) 2238 WP_034424751.1 primosomal protein N' Machinery gene
  MYA84_RS14050 (MYA84_14005) - 2818086..2819939 (+) 1854 WP_004813472.1 cation:proton antiporter -
  MYA84_RS14055 (MYA84_14010) hslO 2819990..2820865 (+) 876 WP_004813475.1 Hsp33 family molecular chaperone HslO -
  MYA84_RS14060 (MYA84_14015) - 2821327..2821791 (+) 465 WP_004813476.1 DUF2147 domain-containing protein -
  MYA84_RS14065 (MYA84_14020) - 2821986..2822447 (+) 462 WP_004813478.1 DUF2147 domain-containing protein -
  MYA84_RS14070 (MYA84_14025) - 2822954..2823283 (+) 330 WP_004813480.1 chaperone modulator CbpM -
  MYA84_RS14075 (MYA84_14030) - 2823366..2823629 (+) 264 WP_008303905.1 YdcH family protein -
  MYA84_RS14080 (MYA84_14035) pnp 2824076..2826163 (-) 2088 WP_171063225.1 polyribonucleotide nucleotidyltransferase -
  MYA84_RS14085 (MYA84_14040) rpsO 2826425..2826694 (-) 270 WP_004637724.1 30S ribosomal protein S15 -
  MYA84_RS14090 (MYA84_14045) recD 2827608..2829380 (-) 1773 WP_004813486.1 exodeoxyribonuclease V subunit alpha -
  MYA84_RS14095 (MYA84_14050) - 2829452..2833570 (-) 4119 WP_184103559.1 UvrD-helicase domain-containing protein -
  MYA84_RS14100 (MYA84_14055) - 2833571..2837278 (-) 3708 WP_111810639.1 exodeoxyribonuclease V subunit gamma -
  MYA84_RS14105 (MYA84_14060) - 2837455..2837958 (+) 504 WP_004890494.1 hypothetical protein -
  MYA84_RS14110 (MYA84_14065) - 2838001..2839419 (-) 1419 WP_108675761.1 phosphate--AMP phosphotransferase -
  MYA84_RS14115 (MYA84_14070) - 2839626..2840330 (+) 705 WP_076752957.1 FFLEELY motif protein -
  MYA84_RS14120 (MYA84_14075) - 2840672..2840995 (+) 324 WP_076752956.1 hypothetical protein -
  MYA84_RS14125 (MYA84_14080) ubiE 2841479..2842423 (+) 945 WP_004890506.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  MYA84_RS14130 (MYA84_14085) - 2842435..2843112 (+) 678 WP_004813501.1 ubiquinone biosynthesis accessory factor UbiJ -
  MYA84_RS14135 (MYA84_14090) - 2843125..2844555 (+) 1431 Protein_2731 ABC1 kinase family protein -
  MYA84_RS14140 (MYA84_14095) ovoA 2844548..2846605 (+) 2058 Protein_2732 5-histidylcysteine sulfoxide synthase -
  MYA84_RS14145 (MYA84_14100) - 2846665..2846913 (-) 249 WP_004813337.1 DUF2789 family protein -
  MYA84_RS14150 (MYA84_14105) - 2847074..2847724 (-) 651 WP_111810577.1 HAD family hydrolase -
  MYA84_RS14155 (MYA84_14110) - 2847904..2848386 (+) 483 WP_004813339.1 RNA pyrophosphohydrolase -
  MYA84_RS14160 (MYA84_14115) ptsP 2848474..2850771 (+) 2298 WP_004813340.1 phosphoenolpyruvate--protein phosphotransferase -
  MYA84_RS14165 (MYA84_14120) - 2850768..2850959 (-) 192 WP_108676021.1 DUF7230 family protein -
  MYA84_RS14170 (MYA84_14125) - 2851106..2852767 (-) 1662 WP_108675776.1 acyl-CoA dehydrogenase family protein -
  MYA84_RS14175 (MYA84_14130) katG 2852963..2855161 (-) 2199 WP_076753004.1 catalase/peroxidase HPI -
  MYA84_RS14180 (MYA84_14135) - 2855666..2856604 (-) 939 WP_111810579.1 cation diffusion facilitator family transporter -
  MYA84_RS14185 (MYA84_14140) - 2857126..2858034 (-) 909 WP_111810581.1 DMT family transporter -
  MYA84_RS14190 (MYA84_14145) hcaD 2858320..2859549 (-) 1230 WP_111810582.1 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase subunit -
  MYA84_RS14195 (MYA84_14150) - 2859554..2860519 (-) 966 WP_111810583.1 3-carboxyethylcatechol 2,3-dioxygenase -
  MYA84_RS14200 (MYA84_14155) hcaB 2860586..2861401 (-) 816 WP_111810584.1 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase -
  MYA84_RS14205 (MYA84_14160) hcaC 2861404..2861730 (-) 327 WP_111810585.1 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit -
  MYA84_RS14210 (MYA84_14165) hcaF 2861730..2862248 (-) 519 WP_004781816.1 3-phenylpropionate/cinnamic acid dioxygenase subunit beta -
  MYA84_RS14215 (MYA84_14170) hcaE 2862245..2863468 (-) 1224 Protein_2747 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha -
  MYA84_RS14220 (MYA84_14175) - 2863522..2864454 (-) 933 WP_271259683.1 IS5 family transposase -
  MYA84_RS14225 (MYA84_14180) - 2864511..2864660 (-) 150 Protein_2749 aromatic ring-hydroxylating dioxygenase subunit alpha -
  MYA84_RS14230 (MYA84_14185) hcaR 2864940..2865842 (+) 903 WP_111810587.1 DNA-binding transcriptional regulator HcaR -
  MYA84_RS14235 (MYA84_14190) - 2866237..2867097 (-) 861 WP_004813371.1 alpha/beta fold hydrolase -
  MYA84_RS14245 (MYA84_14200) - 2868667..2869434 (-) 768 Protein_2753 OprD family outer membrane porin -
  MYA84_RS14250 (MYA84_14205) - 2869548..2870516 (+) 969 WP_014538385.1 IS30 family transposase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84466.45 Da        Isoelectric Point: 8.6431

>NTDB_id=678965 MYA84_RS14045 WP_034424751.1 2815807..2818044(+) (priA) [Acinetobacter schindleri strain H4-3-C1]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAKVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETATLKALEKKGICECVLEPQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPDHEIIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYIRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=678965 MYA84_RS14045 WP_034424751.1 2815807..2818044(+) (priA) [Acinetobacter schindleri strain H4-3-C1]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTAAGGTTGGTGCGCGCGTGGCGGTGTCTTTTG
GCCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTGCCGCCAGACACTCCACTAGATTCCAGTTTTAAACTTAAAGAG
ATTACGGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTACCAACCTTATTACGTCAGGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTACGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACTACTGAAACTGTACTGAACCTGGCAGGGATCGAGACAGCCACCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGCGTGCTGGAACCCCAGGATTTCAGCCCGCAGCCTGTTCAACTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAACATGCCATTCAGCAGGTGCTGAAATTTAAAAATAAATATCAGGCTTTTTTACTGGATGGTCTGACC
GGTAGCGGCAAAACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAGCCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCCGCAGAAACCGGTAAAGCCTCGATTGTGCTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCCAATCTAGGATTGATCATCCTGGATGAGGAACATGATCTGTCTTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTACAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GCATCGATACCTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTCAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTTTAGATTTAAAGGTGGCACAGAAACAACATGGCATCAGCCTGCATCTGATTCAGGAGATACGCAA
ACGTCTGGAAAAAAAAGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTCCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAATCATTCGGGTAGATCGTGACTCTACCAGCCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAGCCGGCGATTTTACTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTAGACTTCCGTGCCACCGA
ACGCACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCACAAGGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAATTACCGGGCTTTTGCTAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTGGAGATCTGGGGACCTATTCCCGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATATCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAGCCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAGCTGAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(214-374)

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.003

99.06

0.703