Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG512_RS38115 Genome accession   NZ_CP109565
Coordinates   8243512..8244024 (-) Length   170 a.a.
NCBI ID   WP_266557191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8238512..8249024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS38105 (OG512_38010) - 8239341..8241659 (+) 2319 WP_266557195.1 beta-glucosidase -
  OG512_RS38110 (OG512_38015) - 8241759..8243048 (+) 1290 WP_405784293.1 MFS transporter -
  OG512_RS38115 (OG512_38020) cytR 8243512..8244024 (-) 513 WP_266557191.1 substrate-binding domain-containing protein Regulator
  OG512_RS38120 (OG512_38025) - 8244343..8244600 (-) 258 WP_405784295.1 hypothetical protein -
  OG512_RS38125 (OG512_38030) - 8244989..8245687 (+) 699 WP_266557187.1 ThuA domain-containing protein -
  OG512_RS38130 (OG512_38035) - 8245672..8246763 (+) 1092 WP_405784298.1 Gfo/Idh/MocA family protein -
  OG512_RS38135 (OG512_38040) - 8246990..8247687 (+) 698 Protein_7534 ABC transporter permease -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18354.93 Da        Isoelectric Point: 10.3863

>NTDB_id=678964 OG512_RS38115 WP_266557191.1 8243512..8244024(-) (cytR) [Streptomyces sp. NBC_01378]
MGGKAATAHLLGLGHRRIAYLGGPESTECNQARLHGYLCALTAHGLAPDLLTHGRFRADHDTEGVTALLARNNPPTAIFA
GKDAIAVGVLREARRRGIRVPEDLSLLGFDGTALAQDSVPALTPVAQPLQEMRRATLRAVLRQSRGEQPDTHRVELATQF
AVRESTTRLR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=678964 OG512_RS38115 WP_266557191.1 8243512..8244024(-) (cytR) [Streptomyces sp. NBC_01378]
GTGGGTGGCAAAGCCGCCACCGCACACCTCTTGGGCCTGGGCCACCGCCGCATCGCCTACCTGGGCGGCCCGGAGTCGAC
GGAATGCAACCAGGCACGCCTGCACGGCTACCTGTGCGCTCTCACGGCCCACGGCCTCGCCCCCGACCTCCTCACCCACG
GCCGCTTCCGCGCCGACCACGACACCGAAGGCGTCACCGCACTCCTGGCCCGCAACAATCCCCCGACCGCGATCTTCGCC
GGCAAAGACGCCATCGCCGTCGGTGTCCTGCGCGAGGCCCGACGTCGCGGCATCCGCGTACCCGAAGACCTGAGCCTGCT
CGGCTTCGACGGCACCGCCCTCGCCCAGGACTCCGTTCCCGCCCTCACCCCCGTCGCCCAACCCCTCCAGGAAATGCGCC
GCGCCACCCTCCGCGCCGTACTCCGCCAATCCCGCGGCGAACAACCCGACACCCACCGCGTGGAACTCGCCACGCAATTC
GCAGTACGCGAATCGACAACGCGCCTCCGGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(8-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

39.506

95.294

0.376