Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   MYA84_RS13000 Genome accession   NZ_CP095872
Coordinates   2595173..2595973 (-) Length   266 a.a.
NCBI ID   WP_008303405.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590173..2600973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS12980 (MYA84_12935) - 2591218..2591916 (-) 699 WP_004813100.1 YfgM family protein -
  MYA84_RS12985 (MYA84_12940) hisS 2591947..2593242 (-) 1296 WP_008303410.1 histidine--tRNA ligase -
  MYA84_RS12990 (MYA84_12945) ispG 2593246..2594367 (-) 1122 WP_008303409.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  MYA84_RS12995 (MYA84_12950) - 2594391..2595182 (-) 792 WP_008303407.1 helix-turn-helix domain-containing protein -
  MYA84_RS13000 (MYA84_12955) pilF 2595173..2595973 (-) 801 WP_008303405.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  MYA84_RS13005 (MYA84_12960) rlmN 2595988..2597223 (-) 1236 WP_108675798.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  MYA84_RS13010 (MYA84_12965) ndk 2597346..2597777 (-) 432 WP_004813112.1 nucleoside-diphosphate kinase -
  MYA84_RS13015 (MYA84_12970) iscX 2597888..2598088 (-) 201 WP_004813114.1 Fe-S cluster assembly protein IscX -
  MYA84_RS13020 (MYA84_12975) - 2598178..2598729 (-) 552 WP_103800608.1 phosphatase PAP2 family protein -
  MYA84_RS13025 (MYA84_12980) - 2598799..2599209 (-) 411 WP_004813117.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30149.32 Da        Isoelectric Point: 9.4227

>NTDB_id=678961 MYA84_RS13000 WP_008303405.1 2595173..2595973(-) (pilF) [Acinetobacter schindleri strain H4-3-C1]
MRNLTSKIAFISTVCVSIALSGCQTAEVGKKDPKKATQVRTQLAVEYLKTGDLDSAKRALDEALKINSRDAQANMMMGVL
LQQEGSRLNLDRAETYFKRAISAEPKNAQARNNYGTYLYQLERYNDAIEQFAIAGATLGYDQRYLALENMGRIYLKQGDL
VNAEKSFKQALQANRDSYISMLELAEIFYLNQQFPAASNMYQQFARSVGQKNQSARALWIGIRTARAEGDQMGMQVLVNQ
LRALFPESPEYQRYLQLQYTTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=678961 MYA84_RS13000 WP_008303405.1 2595173..2595973(-) (pilF) [Acinetobacter schindleri strain H4-3-C1]
TTGAGAAATCTGACATCTAAAATTGCTTTTATTTCAACAGTATGTGTTTCTATTGCTCTATCTGGCTGTCAAACGGCAGA
AGTGGGTAAAAAGGATCCTAAAAAAGCGACCCAGGTGCGTACTCAATTGGCGGTTGAATATCTGAAGACTGGTGATCTGG
ATTCAGCGAAAAGAGCGCTAGATGAGGCGCTTAAAATTAATTCACGTGATGCTCAAGCCAATATGATGATGGGTGTTTTG
TTACAGCAGGAAGGTAGTAGGCTGAACTTGGATCGTGCCGAAACTTACTTTAAGCGCGCGATTTCAGCCGAACCTAAAAA
TGCACAGGCACGTAACAATTATGGCACCTATTTGTATCAGCTTGAACGTTATAATGATGCAATTGAACAGTTTGCAATTG
CAGGCGCGACACTGGGCTATGACCAGCGTTATCTTGCGCTTGAAAATATGGGGCGGATCTACCTGAAGCAGGGTGATCTG
GTGAATGCTGAAAAATCATTCAAACAGGCCCTGCAAGCCAATCGCGATTCTTACATTTCAATGTTAGAGTTGGCAGAGAT
TTTTTATCTGAATCAGCAGTTCCCGGCGGCGTCGAATATGTATCAACAATTTGCACGTTCAGTGGGACAGAAAAACCAGA
GTGCTCGTGCGCTCTGGATCGGCATTCGTACTGCGCGTGCCGAGGGTGATCAAATGGGCATGCAAGTATTGGTCAATCAA
TTGCGTGCATTATTCCCTGAAAGCCCGGAATACCAACGTTATTTGCAATTACAGTACACTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_2)

(146-176)

Tetratricopeptide repeat (TPR_16)

(89-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

76.923

97.744

0.752
  pilF Acinetobacter baylyi ADP1

68.359

96.241

0.658