Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG512_RS33360 Genome accession   NZ_CP109565
Coordinates   7149312..7150097 (-) Length   261 a.a.
NCBI ID   WP_100591111.1    Uniprot ID   A0ABV4SX88
Organism   Streptomyces sp. NBC_01378     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7144312..7155097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS33350 (OG512_33260) - 7145153..7147108 (+) 1956 WP_405785418.1 IucA/IucC family protein -
  OG512_RS33355 (OG512_33265) - 7147149..7149131 (+) 1983 WP_355691510.1 ATP-dependent DNA helicase -
  OG512_RS33360 (OG512_33270) dinR/lexA 7149312..7150097 (-) 786 WP_100591111.1 transcriptional repressor LexA Regulator
  OG512_RS33365 (OG512_33275) nrdR 7150614..7151159 (+) 546 WP_227297763.1 transcriptional regulator NrdR -
  OG512_RS33370 (OG512_33280) - 7151296..7154196 (+) 2901 WP_266559122.1 vitamin B12-dependent ribonucleotide reductase -
  OG512_RS33375 (OG512_33285) - 7154273..7154800 (-) 528 WP_266559120.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28153.94 Da        Isoelectric Point: 7.4237

>NTDB_id=678958 OG512_RS33360 WP_100591111.1 7149312..7150097(-) (dinR/lexA) [Streptomyces sp. NBC_01378]
MTTTADSATITAQDRSQGRLEPVHAMNDASMSAEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=678958 OG512_RS33360 WP_100591111.1 7149312..7150097(-) (dinR/lexA) [Streptomyces sp. NBC_01378]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCATCCATGAGTGCGGAGGGGCCAAAGCCCGCGCGCTCCCTGCCGGGCCGACCTCCCGGAATCCGGGCGGACAGCT
CGGGGCTCACGGACAGGCAGCGCCGTGTCATCGAGGTGATCAGGGACTCCGTGCAGCGGCGCGGTTACCCACCGTCGATG
CGGGAGATCGGCCAGGCGGTGGGCCTGTCGAGCACATCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCCGCGCCTACGAGGTCCGTGGCTCCGACCAGCCGAGCGCGCAGCCCACGGACACCG
CAGGCAAGCCGGCCGCGTCGTACGTCCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCGGAAGAGTCCGTC
GAGGACGTGTTCCCCCTCCCCCGGCAGCTCGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCTGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGAGGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAACTCCGCGTAC
CAGCCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCCGTTCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375