Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MYA84_RS02200 Genome accession   NZ_CP095872
Coordinates   443771..444634 (+) Length   287 a.a.
NCBI ID   WP_213065970.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438771..449634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS02175 (MYA84_02170) - 439061..440263 (+) 1203 WP_184103525.1 CsgG/HfaB family protein -
  MYA84_RS02180 (MYA84_02175) - 440347..441024 (+) 678 WP_004809734.1 hypothetical protein -
  MYA84_RS02185 (MYA84_02180) - 441283..441858 (-) 576 WP_004809732.1 xanthine phosphoribosyltransferase -
  MYA84_RS02190 (MYA84_02185) - 441949..442662 (-) 714 WP_004809730.1 DUF3108 domain-containing protein -
  MYA84_RS02195 (MYA84_02190) - 442814..443503 (-) 690 WP_184103528.1 hypothetical protein -
  MYA84_RS02200 (MYA84_02195) tonB2 443771..444634 (+) 864 WP_213065970.1 energy transducer TonB Machinery gene
  MYA84_RS02205 (MYA84_02200) - 444631..444930 (-) 300 WP_004896079.1 antibiotic biosynthesis monooxygenase family protein -
  MYA84_RS02210 (MYA84_02205) - 444962..445360 (-) 399 WP_111810313.1 hypothetical protein -
  MYA84_RS02215 (MYA84_02210) ybeY 445504..445986 (-) 483 WP_004809720.1 rRNA maturation RNase YbeY -
  MYA84_RS02220 (MYA84_02215) - 446009..447085 (-) 1077 WP_005223307.1 PhoH family protein -
  MYA84_RS02225 (MYA84_02220) miaB 447125..448582 (-) 1458 WP_184103531.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32788.39 Da        Isoelectric Point: 9.5613

>NTDB_id=678945 MYA84_RS02200 WP_213065970.1 443771..444634(+) (tonB2) [Acinetobacter schindleri strain H4-3-C1]
MPLVKSWWKDPIFSSAIGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRVSNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPLPMPDQTAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=678945 MYA84_RS02200 WP_213065970.1 443771..444634(+) (tonB2) [Acinetobacter schindleri strain H4-3-C1]
ATGCCTTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTATAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTTAGCCTGCGCGTCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCAGATCAGACAGCTGGAAAAGAAGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAAGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGACGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGCTTGGCGG
GTGACGTCCGCTTAATGGTGATTCTGAATCAAAATGGGGGTATTCGAGCGATTCGATTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAAAATGAAAGATATTTC
AGAATTACGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.786

97.561

0.7