Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG512_RS18100 Genome accession   NZ_CP109565
Coordinates   3758543..3760471 (+) Length   642 a.a.
NCBI ID   WP_266564497.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753543..3765471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS18065 (OG512_17970) - 3753616..3754017 (-) 402 WP_405781452.1 hypothetical protein -
  OG512_RS18085 (OG512_17990) - 3754841..3755149 (+) 309 WP_266564502.1 YtxH domain-containing protein -
  OG512_RS18090 (OG512_17995) - 3755235..3756674 (+) 1440 WP_266564500.1 FGGY family carbohydrate kinase -
  OG512_RS18095 (OG512_18000) rcrP 3756810..3758543 (+) 1734 WP_405781455.1 ABC transporter ATP-binding protein Regulator
  OG512_RS18100 (OG512_18005) rcrQ 3758543..3760471 (+) 1929 WP_266564497.1 ABC transporter ATP-binding protein Regulator
  OG512_RS18105 (OG512_18010) - 3760617..3762020 (-) 1404 WP_266564495.1 RNA polymerase sigma factor -
  OG512_RS18110 (OG512_18015) dnaG 3762185..3764083 (-) 1899 WP_266564493.1 DNA primase -
  OG512_RS18115 (OG512_18020) - 3764118..3765392 (-) 1275 WP_405781458.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69417.79 Da        Isoelectric Point: 5.3129

>NTDB_id=678915 OG512_RS18100 WP_266564497.1 3758543..3760471(+) (rcrQ) [Streptomyces sp. NBC_01378]
MAGPGGRMMAGGSPDQRSMDFKGSGKRLIRQFKPEKTTMYAMVACVVLSVGLSVLGPKILGRATDLVFAGIIGRQMPAGS
SKAQVIEGMRAKGDSGVADMLSGIDFTPGQGIDFGTVGSVLGIALCTFLGAGLLMAVATRLSNRALNRTVFRMREDIQAK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSFLIATRVGK
RSQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGMMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPGEKPDLLRGLVEFE
NVSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDT
WLFGGTIADNIAYGAAKDVTREQIEEAARAAHADRFVRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGDIVEQGTHDALRAAGGAYERLYEAQFAQAVVE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=678915 OG512_RS18100 WP_266564497.1 3758543..3760471(+) (rcrQ) [Streptomyces sp. NBC_01378]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCAGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTCATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTACGCGATGGTCGCGTGTGTCGTCCTGAGTGTGGGCCTGTCGG
TGCTGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTCAGATGCCCGCCGGGAGC
AGCAAGGCGCAGGTCATCGAGGGGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCGGGGATCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGGGACCGTGGGCTCCGTGCTCGGGATCGCCCTGTGTACGTTCCTGGGGGCCGGTCTGC
TGATGGCCGTGGCGACGCGGCTGTCCAACCGGGCGCTCAACAGGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAG
ATGTCGCGGCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGCGTGCTGGTGATGATGT
TCTGGATCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTCTTCGGGCGTCAGGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTGAACTATGTGCTGGTCGCC
GTGGTGGGTGGCCTGCGGGTCGCCTCGGGTTCACTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGACGAGCAGGAGGCCGACCCGGTGCCGGGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAG
AACGTGTCCTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTGTCCCTCGCCGTGGAGCCGGGGCACACCGTCGC
CATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGCTCCGCTTCTACGAGGTCACCGGCGGGCGCA
TCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGGATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCGGCCAAGGACGTCACCCGGGAGCAGATCGAGGAGGC
GGCGCGGGCCGCCCACGCGGACCGGTTCGTCCGAACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGTTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCACGCGCGTTCCTTTCGGACCCGGTGATACTCGTCCTCGACGAG
GCGACGAGCTCCGTCGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGGACCAGCTT
CGTCATCGCTCACCGGCTGTCCACGATCCGCGACGCCGACACCATCCTGGTGATGGAGAACGGGGACATCGTGGAGCAGG
GCACCCACGATGCGCTGCGCGCCGCGGGTGGGGCGTACGAGCGGCTGTACGAGGCTCAGTTCGCGCAGGCCGTGGTGGAG
GTGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.615

96.262

0.391