Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG512_RS18095 Genome accession   NZ_CP109565
Coordinates   3756810..3758543 (+) Length   577 a.a.
NCBI ID   WP_405781455.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3751810..3763543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS18050 (OG512_17955) - 3751989..3752534 (-) 546 WP_266564510.1 hypothetical protein -
  OG512_RS18055 (OG512_17960) - 3752668..3752940 (+) 273 WP_266564508.1 chaplin -
  OG512_RS18060 (OG512_17965) - 3753240..3753665 (-) 426 WP_266564506.1 tyrosine-type recombinase/integrase -
  OG512_RS18065 (OG512_17970) - 3753616..3754017 (-) 402 WP_405781452.1 hypothetical protein -
  OG512_RS18085 (OG512_17990) - 3754841..3755149 (+) 309 WP_266564502.1 YtxH domain-containing protein -
  OG512_RS18090 (OG512_17995) - 3755235..3756674 (+) 1440 WP_266564500.1 FGGY family carbohydrate kinase -
  OG512_RS18095 (OG512_18000) rcrP 3756810..3758543 (+) 1734 WP_405781455.1 ABC transporter ATP-binding protein Regulator
  OG512_RS18100 (OG512_18005) rcrQ 3758543..3760471 (+) 1929 WP_266564497.1 ABC transporter ATP-binding protein Regulator
  OG512_RS18105 (OG512_18010) - 3760617..3762020 (-) 1404 WP_266564495.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62559.68 Da        Isoelectric Point: 6.4050

>NTDB_id=678914 OG512_RS18095 WP_405781455.1 3756810..3758543(+) (rcrP) [Streptomyces sp. NBC_01378]
MLIRLLRTYLAPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILTFGAIMIAITVVQMVCNIGAVFYGA
RTASALGRDVRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFREANADLTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PSSPVRELRSHGHLEIRGAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVNGVDVR
TIDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWNALEVAQAKDFVKKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETSEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678914 OG512_RS18095 WP_405781455.1 3756810..3758543(+) (rcrP) [Streptomyces sp. NBC_01378]
GTGCTCATACGACTCCTGCGGACCTACCTCGCTCCGTACAAGAAACCCATCGGCGTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCGTCGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGACGTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
CGCACCGCGTCCGCGCTCGGACGGGACGTCCGGGCCTCCGTGTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGATGGG
CCAGTTCGGCGCGCCGTCCCTGATCACCCGCACGACGAACGACGTGCAGCAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTGCCCCTGTCGGGCGTG
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGCCTGATCGTGCGCCGCCTGCGGCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGCGTCATCCGCGCCTTCGTGCGCGACG
GCTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGATCTGACCGAGGTTTCCCTCGGCACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCATCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGTCCAGCGTCGTGCCG
CCGTCCTCGCCGGTGCGGGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTGCTCAAGGCCATCCAGGTCACCGCGCGCCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTTCTCGGCCTGGTGCCGCGCCTGTTCGACGTGACCGACGGCGAGGTCCTGGTGAACGGCGTCGACGTGCGC
ACCATCGACCCTGCGCTGCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAAGAGCTGTGGAACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAAGAAGCTGGAGAACGGGCTCGACTCCCCGATCTCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCACTGCGGGCCGCGCTGGGTCACGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GCGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACGGGCACCCATCACGAGCTGATGGACGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.107

97.054

0.38