Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG512_RS13870 Genome accession   NZ_CP109565
Coordinates   2843453..2843584 (-) Length   43 a.a.
NCBI ID   WP_405780881.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2838453..2848584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS13850 (OG512_13755) - 2838634..2839746 (-) 1113 WP_405780875.1 hypothetical protein -
  OG512_RS13855 (OG512_13760) - 2840461..2842605 (-) 2145 WP_405780877.1 tetratricopeptide repeat protein -
  OG512_RS13860 (OG512_13765) - 2842602..2843012 (-) 411 WP_405780879.1 hypothetical protein -
  OG512_RS13865 (OG512_13770) - 2843296..2843385 (+) 90 Protein_2759 glutamine synthetase -
  OG512_RS13870 (OG512_13775) dinR/lexA 2843453..2843584 (-) 132 WP_405780881.1 hypothetical protein Regulator
  OG512_RS13875 (OG512_13780) - 2843696..2845111 (-) 1416 WP_405780883.1 pentapeptide repeat-containing protein -
  OG512_RS13880 (OG512_13785) - 2845595..2845825 (-) 231 WP_405780885.1 winged helix-turn-helix transcriptional regulator -
  OG512_RS13885 (OG512_13790) - 2845822..2846022 (-) 201 WP_405780887.1 hypothetical protein -
  OG512_RS13890 (OG512_13795) - 2846675..2847664 (+) 990 WP_355694891.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 43 a.a.        Molecular weight: 4675.40 Da        Isoelectric Point: 12.0295

>NTDB_id=678908 OG512_RS13870 WP_405780881.1 2843453..2843584(-) (dinR/lexA) [Streptomyces sp. NBC_01378]
MREIAAAVGLASPSSVLYQLRRLEGAGVLRRARGASTRDYRLS

Nucleotide


Download         Length: 132 bp        

>NTDB_id=678908 OG512_RS13870 WP_405780881.1 2843453..2843584(-) (dinR/lexA) [Streptomyces sp. NBC_01378]
GTGCGCGAGATCGCTGCGGCCGTCGGCCTGGCCAGCCCGTCTTCGGTGCTGTATCAACTGCGGCGCCTTGAGGGGGCCGG
CGTTCTTCGGCGGGCTCGGGGTGCTAGCACGCGGGACTACCGGCTCAGTTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

58.065

72.093

0.419