Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JLF30_RS23765 Genome accession   NZ_AP022478
Coordinates   5010972..5011964 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain STN0717-11     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5005972..5016964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF30_RS23755 (STN0717ESC11_45740) yieP 5008864..5009556 (+) 693 WP_001131162.1 FadR/GntR family transcriptional regulator -
  JLF30_RS23760 (STN0717ESC11_45750) mdtD 5009579..5011006 (+) 1428 WP_001586479.1 multidrug transporter subunit MdtD -
  JLF30_RS23765 (STN0717ESC11_45760) cytR 5010972..5011964 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  JLF30_RS23770 (STN0717ESC11_45770) rbsK 5011968..5012897 (-) 930 WP_001309865.1 ribokinase -
  JLF30_RS23775 (STN0717ESC11_45780) rbsB 5013023..5013913 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  JLF30_RS23780 (STN0717ESC11_45790) rbsC 5013938..5014903 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  JLF30_RS23785 (STN0717ESC11_45800) rbsA 5014908..5016413 (-) 1506 WP_001586478.1 ribose ABC transporter ATP-binding protein RbsA -
  JLF30_RS23790 (STN0717ESC11_45810) rbsD 5016421..5016840 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=67889 JLF30_RS23765 WP_000224470.1 5010972..5011964(-) (cytR) [Escherichia coli strain STN0717-11]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=67889 JLF30_RS23765 WP_000224470.1 5010972..5011964(-) (cytR) [Escherichia coli strain STN0717-11]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCACCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment