Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG209_RS37545 Genome accession   NZ_CP109561
Coordinates   8351851..8352678 (-) Length   275 a.a.
NCBI ID   WP_123467281.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01383     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8346851..8357678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG209_RS37520 (OG209_37480) - 8347590..8348009 (-) 420 WP_124286309.1 RidA family protein -
  OG209_RS37525 (OG209_37485) - 8348006..8349133 (-) 1128 WP_123467289.1 mandelate racemase/muconate lactonizing enzyme family protein -
  OG209_RS37530 (OG209_37490) - 8349175..8349978 (-) 804 WP_164494563.1 creatininase family protein -
  OG209_RS37535 (OG209_37495) - 8350020..8350976 (+) 957 WP_164494564.1 ROK family protein -
  OG209_RS37540 (OG209_37500) - 8351021..8351854 (-) 834 WP_123467283.1 ATP-binding cassette domain-containing protein -
  OG209_RS37545 (OG209_37505) amiE 8351851..8352678 (-) 828 WP_123467281.1 ABC transporter ATP-binding protein Regulator
  OG209_RS37550 (OG209_37510) - 8352675..8353580 (-) 906 WP_123467279.1 ABC transporter permease -
  OG209_RS37555 (OG209_37515) - 8353577..8354569 (-) 993 WP_123467277.1 ABC transporter permease -
  OG209_RS37560 (OG209_37520) - 8354569..8356143 (-) 1575 WP_123467275.1 ABC transporter substrate-binding protein -
  OG209_RS37565 (OG209_37525) - 8356198..8357064 (+) 867 WP_123467273.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 29606.95 Da        Isoelectric Point: 6.4134

>NTDB_id=678883 OG209_RS37545 WP_123467281.1 8351851..8352678(-) (amiE) [Streptomyces sp. NBC_01383]
MTHSPDAPDAVPVLEFRDLRVDFELASSTVHAVRGVNLSVAAGETLAVVGESGSGKSATALSALRLNPEPPCVYAGGQVL
LDGMDVLALRERELRKVRGAGISMVFQDPMTSLDPLQRVGAQVTEVLRLHGGHTRAAARQAALTALDEVGIPDPEHRYRQ
YPHELSGGLRQRVMIASALVARPRVLIADEPTTALDVTVQRQILELLVRLQRRHGMAVLLITHDLGVVAETADRVAVMRH
GEIVETGDVDQVFARPAAEYTRSLLAATPRLEPAA

Nucleotide


Download         Length: 828 bp        

>NTDB_id=678883 OG209_RS37545 WP_123467281.1 8351851..8352678(-) (amiE) [Streptomyces sp. NBC_01383]
ATGACCCACTCCCCCGATGCCCCGGACGCCGTACCCGTCCTCGAATTCCGGGACCTGCGCGTCGACTTCGAGCTCGCCTC
CTCCACCGTGCACGCGGTGCGCGGTGTGAACCTGTCCGTCGCCGCCGGTGAGACCCTCGCCGTCGTCGGCGAGTCCGGCA
GCGGCAAGTCCGCCACCGCCCTGTCCGCGCTGCGCCTCAACCCGGAACCGCCGTGTGTGTACGCGGGTGGCCAGGTCCTG
CTCGACGGAATGGACGTACTGGCCCTGCGGGAGCGGGAGTTGCGCAAAGTGCGCGGCGCCGGGATCTCCATGGTGTTCCA
GGACCCGATGACCAGCCTCGACCCGCTGCAGCGAGTCGGCGCCCAGGTCACCGAGGTCCTGCGGCTGCACGGCGGTCACA
CCCGCGCCGCGGCGCGGCAGGCGGCGCTGACCGCGCTCGACGAGGTCGGCATCCCCGACCCGGAACACCGCTACCGGCAG
TACCCGCACGAACTGTCCGGCGGACTGCGCCAGCGCGTCATGATCGCCTCCGCGCTCGTGGCCCGGCCCCGCGTGCTGAT
CGCCGACGAGCCGACGACGGCGCTCGACGTGACCGTGCAGCGGCAGATCCTCGAACTCCTCGTGCGGCTGCAACGCCGGC
ACGGCATGGCCGTCCTGCTCATCACCCATGACCTGGGGGTCGTCGCGGAGACCGCCGACCGCGTCGCCGTCATGCGGCAC
GGCGAGATCGTCGAGACCGGGGACGTGGACCAGGTCTTCGCCCGTCCCGCCGCGGAATACACCCGCAGCCTGCTGGCCGC
CACCCCCCGACTGGAGCCCGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(34-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.692

94.545

0.451
  amiE Streptococcus thermophilus LMG 18311

47.308

94.545

0.447
  amiE Streptococcus thermophilus LMD-9

47.308

94.545

0.447
  oppD Streptococcus mutans UA159

45.627

95.636

0.436