Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG209_RS28215 Genome accession   NZ_CP109561
Coordinates   6263901..6265634 (-) Length   577 a.a.
NCBI ID   WP_405701052.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01383     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6258901..6270634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG209_RS28205 (OG209_28195) - 6260777..6261925 (+) 1149 WP_123470791.1 RNA polymerase sigma factor -
  OG209_RS28210 (OG209_28200) rcrQ 6261970..6263901 (-) 1932 WP_123470789.1 ABC transporter ATP-binding protein Regulator
  OG209_RS28215 (OG209_28205) rcrP 6263901..6265634 (-) 1734 WP_405701052.1 ABC transporter ATP-binding protein Regulator
  OG209_RS28220 (OG209_28210) - 6265832..6267277 (-) 1446 WP_123470785.1 FGGY family carbohydrate kinase -
  OG209_RS28225 (OG209_28215) - 6267345..6267644 (-) 300 WP_123470782.1 YtxH domain-containing protein -
  OG209_RS28245 (OG209_28235) - 6268809..6268916 (+) 108 Protein_5575 transposase -
  OG209_RS28250 (OG209_28240) - 6269085..6269264 (+) 180 WP_405701056.1 hypothetical protein -
  OG209_RS28255 (OG209_28245) - 6269254..6269784 (+) 531 WP_405701058.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62511.46 Da        Isoelectric Point: 5.3596

>NTDB_id=678868 OG209_RS28215 WP_405701052.1 6263901..6265634(-) (rcrP) [Streptomyces sp. NBC_01383]
MLIKLLRAYLGPYKKPIALLVVFQLLQTSAALYLPTLNADIIDHGVVKGDTDYILQYGGAMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVDPVTELRAHGHLDVRGADFRYPGAEASVLRSVNLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQQPEIYLFDDSFSALDYTTDAALRAALLRETAAATVVIVAQRVSTIRDADRILVMDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678868 OG209_RS28215 WP_405701052.1 6263901..6265634(-) (rcrP) [Streptomyces sp. NBC_01383]
GTGCTCATAAAACTCCTGCGGGCCTACCTCGGTCCGTACAAGAAGCCGATCGCGCTGCTGGTGGTCTTCCAGCTGCTCCA
GACCTCCGCCGCCCTCTATCTGCCCACCCTGAACGCCGACATCATCGACCACGGTGTCGTCAAGGGGGACACGGACTACA
TCCTTCAGTACGGCGGCGCCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGTGCC
CGTACCGCGTCCGCCCTCGGCCGCGATGTCCGGGCGGCGGTCTTCGACCGGGTCCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCCCCTTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTCTCGGCACCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTCCTCGCGGTGGTGCCGGTCCTCGGGATCGCGGTGAGTCTGATCGTGAAGCGGATGCGTCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GCTACGAGGAGGAGCGCTTTCGCGGTGCCAACACCGAGCTGACGGACGTGGCACTGTCCACCGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCCAGCGTGGTGCCG
CCGGTCGATCCGGTGACCGAACTGCGCGCCCACGGGCACCTGGATGTCCGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGCGTCGGTGCTGCGGTCGGTGAATCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACACTGGATCCGGCGCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTATCTGTTCTCCGGAACGGTCGCGAC
CAATCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAGCACGGTCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGAGGCAGCGCCTG
TCGATCGCCCGGACGCTGGTCCAGCAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTGGACTACACCACGGA
CGCCGCGCTGCGCGCCGCGCTGCTGCGGGAGACCGCCGCCGCGACCGTGGTGATCGTCGCACAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGATGGACGAGGGCCGGGTCGTCGGCTCCGGCAGTCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.331

94.107

0.38