Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG209_RS28210 Genome accession   NZ_CP109561
Coordinates   6261970..6263901 (-) Length   643 a.a.
NCBI ID   WP_123470789.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01383     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6256970..6268901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG209_RS28195 (OG209_28185) - 6257281..6258540 (+) 1260 WP_123470795.1 NAD(P)/FAD-dependent oxidoreductase -
  OG209_RS28200 (OG209_28190) dnaG 6258667..6260583 (+) 1917 WP_123470793.1 DNA primase -
  OG209_RS28205 (OG209_28195) - 6260777..6261925 (+) 1149 WP_123470791.1 RNA polymerase sigma factor -
  OG209_RS28210 (OG209_28200) rcrQ 6261970..6263901 (-) 1932 WP_123470789.1 ABC transporter ATP-binding protein Regulator
  OG209_RS28215 (OG209_28205) rcrP 6263901..6265634 (-) 1734 WP_405701052.1 ABC transporter ATP-binding protein Regulator
  OG209_RS28220 (OG209_28210) - 6265832..6267277 (-) 1446 WP_123470785.1 FGGY family carbohydrate kinase -
  OG209_RS28225 (OG209_28215) - 6267345..6267644 (-) 300 WP_123470782.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69446.84 Da        Isoelectric Point: 5.5253

>NTDB_id=678867 OG209_RS28210 WP_123470789.1 6261970..6263901(-) (rcrQ) [Streptomyces sp. NBC_01383]
MAGPGGRMMAGGAPTERSMDFKGSTKRLLKRFASERTTLYVMLVAGALSVALSVVGPKILGKATDLVFAGVIGRQMPEGT
TKEQAIAGLHKTNSGLADMLSKVDFTPGKGMDFDAIGHVLLAALITYVGAGLLMLVSTRLSIRVINRVVFQMREDIQTKL
SRLPLSYFDRQKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLIMMFWISPLLALVALATVPLSVVVATKVGKR
SQPQFVQQWKVTGRLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
IGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPAPGKGAHPEELRGSVSL
EHVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVATMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGEVGREQIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAHGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=678867 OG209_RS28210 WP_123470789.1 6261970..6263901(-) (rcrQ) [Streptomyces sp. NBC_01383]
ATGGCAGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGCTCCACGAAGCG
GCTGCTGAAGCGCTTCGCCTCGGAGCGGACCACCCTGTACGTGATGCTGGTGGCCGGTGCGCTGAGCGTGGCGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCGGAGGGGACC
ACCAAGGAGCAGGCCATCGCGGGCCTGCACAAGACCAACAGCGGCCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGCAAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGCCGCGCTGATCACGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGCGTCGTCTTCCAGATGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGTCAGAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATAGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTCGTCGCCCTGGCGACGGTGCCGCTGTCGGTGGTCGTGGCGACCAAGGTGGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAGGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCCGTG
ATCGGCGGGCTGCGGGTAGCCTCCGGTGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCGTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGATCCCGCACCGGGCAAGGGCGCGCACCCGGAGGAGCTGCGCGGCAGCGTCTCGCTG
GAGCACGTCTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGTGTCGAACCCGGTCACACGGT
CGCGATCGTCGGCCCGACCGGTGCGGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCGCCCTGGACGGGGTGGACGTCGCGACGATGTCGCGCGACGACCTGCGGTCGGGGATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGCGCGTCGGGCGAGGTCGGCCGGGAGCAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCA
CCGGCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCACGCCTGGCGCACGGTCGTACGAG
CTTCGTGATCGCACACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTGATGGAGAACGGCTCGATCGTCGAAC
AGGGCACGCACGACGAGCTGCTGGAGGCGCACGGCGCGTACGCCCGGCTGTACGCGGCCCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(42-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.144

85.07

0.367