Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MYF79_RS04365 Genome accession   NZ_CP095855
Coordinates   1042820..1044190 (-) Length   456 a.a.
NCBI ID   WP_247812731.1    Uniprot ID   -
Organism   Chitinophaga filiformis strain YT5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037820..1049190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF79_RS04345 (MYF79_04345) ricT 1038707..1040167 (-) 1461 WP_247812727.1 regulatory iron-sulfur-containing complex subunit RicT -
  MYF79_RS04350 (MYF79_04350) - 1040294..1041433 (-) 1140 WP_247812728.1 ATP-binding protein -
  MYF79_RS04355 (MYF79_04355) - 1041443..1041934 (-) 492 WP_247812729.1 glutathione peroxidase -
  MYF79_RS04360 (MYF79_04360) - 1042074..1042763 (-) 690 WP_247812730.1 ComF family protein -
  MYF79_RS04365 (MYF79_04365) radA 1042820..1044190 (-) 1371 WP_247812731.1 DNA repair protein RadA Machinery gene
  MYF79_RS04370 (MYF79_04370) - 1044821..1045510 (+) 690 WP_247812732.1 zinc metallopeptidase -
  MYF79_RS04375 (MYF79_04375) rplM 1046302..1046745 (+) 444 WP_110053299.1 50S ribosomal protein L13 -
  MYF79_RS04380 (MYF79_04380) rpsI 1046760..1047149 (+) 390 WP_247812733.1 30S ribosomal protein S9 -
  MYF79_RS04385 (MYF79_04385) rpsB 1047224..1048252 (+) 1029 WP_199654522.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50591.02 Da        Isoelectric Point: 5.8267

>NTDB_id=678830 MYF79_RS04365 WP_247812731.1 1042820..1044190(-) (radA) [Chitinophaga filiformis strain YT5]
MKIKTAFFCQNCGYESAKWTGKCPSCGQWNTFVEEKVQKDIPLRNTSWQPEKENGRSDNIVNLSEVSGIEEDRLLTPDAE
LNRVLGGGIVPGSLVLVGGEPGIGKSTLFLQNALQLKDITTLYISGEESAQQIKMRADRLQVKNDLFYLLTETSTQTIFQ
EIKKLRPQLVIVDSIQTLQSPFIESAPGSVSQIRETTAEMQRFAKESHTPVFLIGHITKDGAIAGPKILEHMVDTVLQFE
GDQHYAYRILRTIKNRFGSTAELGIYEMTGAGLRQVTNPSEILISQREDQLSGVAIAATMEGMRPMLVEVQALVTQSVYG
TPQRTVTGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGIRVEDPSIDLAVLCALLSSYEDAAISSKICFAGEVGLSG
EIRAVNRIEQRIAEAEKLGFEKIFISRYNKKGTDFSKFNIEVVPVGRVDEVYRSLF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=678830 MYF79_RS04365 WP_247812731.1 1042820..1044190(-) (radA) [Chitinophaga filiformis strain YT5]
ATGAAAATTAAAACTGCGTTCTTCTGTCAGAATTGTGGATACGAATCAGCTAAATGGACCGGTAAATGTCCAAGTTGTGG
GCAATGGAATACATTCGTTGAAGAAAAAGTACAAAAGGATATCCCTTTACGTAATACCAGCTGGCAACCTGAAAAAGAAA
ACGGCAGATCAGATAACATCGTGAACCTTTCCGAAGTGAGCGGCATAGAAGAAGACCGCCTGCTCACGCCCGATGCAGAA
CTGAACCGTGTATTGGGCGGCGGTATAGTACCCGGCTCCTTAGTACTTGTAGGAGGCGAACCCGGTATAGGCAAAAGCAC
CTTGTTCCTGCAGAACGCATTGCAACTCAAAGACATCACTACCCTCTACATCAGTGGTGAGGAAAGTGCACAGCAGATAA
AAATGAGAGCGGACAGATTACAGGTAAAAAATGATCTGTTCTATCTGCTCACAGAAACATCTACACAAACCATCTTCCAG
GAAATAAAGAAACTACGTCCGCAACTCGTTATAGTTGACTCGATTCAAACTTTACAATCGCCTTTTATCGAATCGGCTCC
CGGTAGTGTATCCCAGATCAGGGAAACGACCGCCGAAATGCAACGTTTTGCCAAGGAGAGCCATACTCCTGTGTTCCTCA
TCGGCCATATCACCAAAGATGGCGCTATTGCAGGCCCTAAGATACTGGAGCATATGGTAGACACCGTGCTGCAGTTCGAA
GGCGATCAACACTATGCTTACCGCATACTCCGCACTATCAAGAACCGTTTCGGATCAACAGCGGAACTGGGCATTTATGA
AATGACCGGCGCCGGATTAAGACAGGTCACCAACCCGTCGGAGATCCTGATATCACAAAGGGAAGACCAGCTGAGCGGTG
TGGCTATTGCCGCTACTATGGAAGGCATGCGCCCTATGCTGGTGGAAGTACAGGCGCTGGTAACACAGTCTGTATATGGC
ACTCCTCAACGTACCGTCACCGGTTTCGATCTGCGCAGGCTGCAACTGCTGCTGGCCGTACTGGAAAAACGCGGCGGATT
TCATTTCGGTGTAAAAGATGTCTTCCTGAACATTGCCGGCGGTATTCGTGTAGAAGATCCTTCTATTGACCTCGCAGTAT
TGTGCGCGCTCTTATCTTCCTACGAAGACGCCGCCATCAGCAGCAAGATATGTTTTGCAGGAGAGGTAGGTCTCAGTGGA
GAGATACGCGCTGTGAACCGTATAGAACAACGTATTGCAGAAGCAGAAAAACTGGGATTCGAAAAGATCTTCATCAGCCG
CTACAATAAGAAGGGCACAGATTTCAGCAAGTTCAATATTGAAGTGGTACCTGTAGGCAGGGTCGATGAAGTATACAGAA
GCCTCTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(70-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

50.877

100

0.509
  radA Streptococcus pneumoniae D39

50.877

100

0.509
  radA Streptococcus pneumoniae R6

50.877

100

0.509
  radA Streptococcus pneumoniae Rx1

50.877

100

0.509
  radA Streptococcus mitis NCTC 12261

50.877

100

0.509
  radA Streptococcus mitis SK321

50.658

100

0.507
  radA Bacillus subtilis subsp. subtilis str. 168

50.549

99.781

0.504