Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG209_RS10490 Genome accession   NZ_CP109561
Coordinates   2355786..2356580 (+) Length   264 a.a.
NCBI ID   WP_123462787.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01383     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2350786..2361580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG209_RS10475 (OG209_10455) - 2351047..2351583 (+) 537 WP_123462789.1 TerD family protein -
  OG209_RS10480 (OG209_10460) - 2351687..2354593 (-) 2907 WP_405699404.1 vitamin B12-dependent ribonucleotide reductase -
  OG209_RS10485 (OG209_10465) nrdR 2354753..2355265 (-) 513 WP_073737717.1 transcriptional regulator NrdR -
  OG209_RS10490 (OG209_10470) dinR/lexA 2355786..2356580 (+) 795 WP_123462787.1 transcriptional repressor LexA Regulator
  OG209_RS10495 (OG209_10475) - 2356663..2358633 (-) 1971 WP_123462785.1 ATP-dependent DNA helicase -
  OG209_RS10500 (OG209_10480) - 2358684..2360615 (-) 1932 WP_124285386.1 IucA/IucC family siderophore biosynthesis protein -
  OG209_RS10505 (OG209_10485) - 2360676..2361410 (-) 735 WP_405699406.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28636.41 Da        Isoelectric Point: 6.9856

>NTDB_id=678823 OG209_RS10490 WP_123462787.1 2355786..2356580(+) (dinR/lexA) [Streptomyces sp. NBC_01383]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=678823 OG209_RS10490 WP_123462787.1 2355786..2356580(+) (dinR/lexA) [Streptomyces sp. NBC_01383]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGACCGGAGCCCGCGCGCCCAGCGCGCTCGCTGCCCGGGCGACCTCCTGGAATCCGAG
CGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGGGGATACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGTACGTCCTCCGTCGCGCATCAGCTCATGGCTCTGGAGCG
CAAGGGATTCCTGCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTGCGCGGTTCGGATCAGCCCAGCACACAGCCCA
CGGACACCACGGGGAAGCCGGCGGCCTCCTATGTGCCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAG
GAATCCGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGTGACGGAGAGCTCTTCGTACTGAAGGTCGTCGGCGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACCGTCCGCCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCGGCGATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGTCATGTCTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371