Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MWH26_RS17730 Genome accession   NZ_CP095848
Coordinates   4223415..4224803 (+) Length   462 a.a.
NCBI ID   WP_244694213.1    Uniprot ID   -
Organism   Hymenobacter sublimis strain 5516 S-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4218415..4229803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWH26_RS17715 (MWH26_17715) - 4219038..4219865 (-) 828 WP_247975319.1 metallophosphoesterase -
  MWH26_RS17720 (MWH26_17720) - 4220117..4221772 (-) 1656 WP_247975320.1 FAD-dependent oxidoreductase -
  MWH26_RS17725 (MWH26_17725) - 4221833..4223230 (-) 1398 WP_247975321.1 sensor histidine kinase -
  MWH26_RS17730 (MWH26_17730) radA 4223415..4224803 (+) 1389 WP_244694213.1 DNA repair protein RadA Machinery gene
  MWH26_RS17735 (MWH26_17735) - 4225096..4226550 (+) 1455 WP_247975322.1 redoxin family protein -
  MWH26_RS17740 (MWH26_17740) - 4226626..4226988 (-) 363 WP_247975323.1 hypothetical protein -
  MWH26_RS17745 (MWH26_17745) - 4227320..4228345 (+) 1026 WP_247975324.1 SPASM domain-containing protein -
  MWH26_RS17750 (MWH26_17750) - 4228661..4229332 (+) 672 WP_247975325.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50209.57 Da        Isoelectric Point: 6.5027

>NTDB_id=678821 MWH26_RS17730 WP_244694213.1 4223415..4224803(+) (radA) [Hymenobacter sublimis strain 5516 S-25]
MAKVKTLFFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIEKADANPAANAWKASTSVGSTTKAAKPKPLGDIIYEEESRLN
THDAELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMQLRNLRILYVSGEESEQQIKMRAERLGQQHPGLYILTETNT
QNIFRQIDQLQPNVVVVDSIQTLHSTIVEAGPGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVDT
VLQFEGDRHLTYRILRTIKNRFGSTAELGIYEMQGAGLRQVSNPSEILLSQRTEQLSGIAIGATLEGNRPLLVEVQALVT
PATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDVPIRNEICLAAE
VGLSGEIRAVSRLDQRLSESEKLGFAEMYISQFNAKGLDLARYGIRVHPAGRLDEVLTGLFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=678821 MWH26_RS17730 WP_244694213.1 4223415..4224803(+) (radA) [Hymenobacter sublimis strain 5516 S-25]
ATGGCCAAAGTTAAAACCCTATTTTTCTGTCAGAACTGCGGCGCGCAATCAGCCAAGTGGATCGGGCGCTGCCCCAGCTG
CGGGGAGTGGAATACCTACGTGGAGGAAGTGATTGAGAAGGCCGACGCTAACCCGGCCGCCAACGCCTGGAAGGCCTCCA
CCTCCGTGGGCTCCACTACCAAAGCGGCCAAGCCCAAGCCCCTCGGCGACATTATTTACGAGGAAGAATCACGCCTGAAC
ACCCACGACGCGGAGCTGAACCGGGTGCTGGGCGGCGGACTAGTGCCCGGCTCCCTGGTGCTGATCGGGGGCGAGCCGGG
CATCGGTAAAAGCACCCTGATGTTGCAGATTGCCATGCAGTTGCGCAACCTGCGCATCCTGTACGTGTCGGGCGAGGAAA
GTGAGCAGCAAATCAAGATGCGGGCCGAACGCCTCGGGCAGCAGCACCCGGGCCTTTACATCCTCACCGAAACCAACACC
CAGAACATCTTCCGCCAAATCGACCAGCTTCAGCCCAACGTGGTCGTGGTCGATTCCATCCAGACCCTGCACAGCACCAT
TGTGGAAGCCGGTCCCGGTTCCGTGAGCCAGGTGCGCGAGTGCACCACCGAGCTGCTCAAGTACGCCAAGGATACGGGCG
TGCCAGTGCTGCTCATCGGCCACATCACCAAGGATGGCTCCATTGCCGGCCCCAAAATCCTGGAGCACATGGTGGATACC
GTGCTGCAGTTTGAGGGCGACCGGCACCTGACCTACCGTATTCTGCGCACCATCAAAAACCGCTTCGGCTCCACCGCCGA
GCTGGGCATCTACGAAATGCAGGGCGCGGGGCTGCGCCAGGTAAGCAACCCCTCCGAGATTCTGCTGAGCCAGCGCACGG
AGCAGCTCAGCGGCATTGCCATTGGGGCTACCCTGGAAGGCAACCGGCCGCTGCTAGTGGAGGTGCAGGCCCTCGTGACG
CCCGCTACCTACGGCACGCCCCAGCGTTCCTCCACGGGCTTCGACAGCAAGCGCTTGCAGATGCTACTAGCGGTACTAGA
GAAGCGTAGCGGCCTGCGCCTAGGTCAGCACGACGTGTTCCTGAACATCGCTGGCGGCCTGCGCCTCGAAGACCCAGCAT
TGGACTTAGCCGTGTGCGCGGCGGTAGTAAGTTCGCTTAATGACGTACCCATTCGCAACGAAATTTGCCTGGCGGCGGAG
GTTGGCCTGAGCGGGGAGATTCGGGCCGTGAGCCGGCTGGATCAGCGCCTGAGTGAATCGGAAAAATTGGGCTTCGCCGA
AATGTACATTTCGCAATTCAACGCCAAAGGGCTGGACCTGGCCCGCTACGGCATCCGGGTGCATCCGGCGGGAAGGCTAG
ATGAGGTGCTGACGGGCCTTTTTGGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(75-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.724

100

0.519
  radA Streptococcus pneumoniae Rx1

49.134

100

0.491
  radA Streptococcus pneumoniae D39

49.134

100

0.491
  radA Streptococcus pneumoniae R6

49.134

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.134

100

0.491
  radA Streptococcus mitis NCTC 12261

48.918

100

0.489
  radA Streptococcus mitis SK321

48.812

100

0.489