Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MU856_RS01880 Genome accession   NZ_CP095845
Coordinates   391910..393271 (+) Length   453 a.a.
NCBI ID   WP_234180575.1    Uniprot ID   -
Organism   Sphingopyxis sp. GC21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 386910..398271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU856_RS01860 - 386973..388457 (+) 1485 WP_263588271.1 aldehyde dehydrogenase family protein -
  MU856_RS01865 - 388569..390071 (-) 1503 WP_234180569.1 acetyl-CoA acetyltransferase -
  MU856_RS01870 - 390073..390867 (-) 795 WP_234180571.1 enoyl-CoA hydratase-related protein -
  MU856_RS01875 fsa 391055..391705 (-) 651 WP_234180573.1 fructose-6-phosphate aldolase -
  MU856_RS01880 radA 391910..393271 (+) 1362 WP_234180575.1 DNA repair protein RadA Machinery gene
  MU856_RS01885 - 393282..393842 (+) 561 WP_234180577.1 CvpA family protein -
  MU856_RS01890 - 393839..394267 (+) 429 WP_234180579.1 iron-sulfur cluster assembly scaffold protein -
  MU856_RS01895 - 394264..396165 (+) 1902 WP_234180581.1 cation:proton antiporter -
  MU856_RS01900 aroB 396192..397295 (-) 1104 WP_217373234.1 3-dehydroquinate synthase -
  MU856_RS01905 - 397292..397858 (-) 567 WP_217373235.1 shikimate kinase -
  MU856_RS01910 - 397952..398119 (+) 168 WP_186403454.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47528.26 Da        Isoelectric Point: 5.9540

>NTDB_id=678808 MU856_RS01880 WP_234180575.1 391910..393271(+) (radA) [Sphingopyxis sp. GC21]
MAKAKRQYVCQNCGSVSYRWQGQCADCGEWNTLVEEASETVFSAKHDLSKGGRSLALETLGEHSPMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGKSVVYISGEEAAGQVRLRAQRLGLGDAPVALASATSVRDILATL
DSRDADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDGGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGGAEVYLNIAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
IRPVAHDALRLREAAKLGFSTGWGPKGMKAVNGIGVTGFTRLGELVDLMLGRD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=678808 MU856_RS01880 WP_234180575.1 391910..393271(+) (radA) [Sphingopyxis sp. GC21]
ATGGCCAAAGCTAAGCGTCAATATGTCTGCCAGAATTGCGGGTCGGTCTCGTACCGGTGGCAGGGGCAATGCGCCGATTG
CGGCGAGTGGAATACCCTGGTCGAAGAGGCGAGCGAAACCGTCTTTTCAGCCAAGCACGACCTGTCGAAAGGCGGCCGTT
CGCTGGCGCTCGAGACGCTGGGCGAGCATAGCCCGATGCCGGAGCGGATGCTGTGCGGCATCGCCGAATTCGACCGGGCG
CTCGGCGGCGGCTTCGTCGCCGGATCGGCGACGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCTTGTTGTTGCA
AGCGGCCGGGCGGCTCGCGAAGGCGGGCAAGTCGGTCGTCTATATCAGCGGCGAGGAAGCGGCGGGTCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCGATGCGCCGGTCGCGCTGGCGAGCGCGACGTCGGTGCGCGACATATTGGCGACGCTC
GACAGCCGCGACGCCGATTTCGTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTCATCGACAGCGCGCCGGGAAC
GGTGAGTCAGGTCCGCGCGAGCGCGCAGGAACTGATCCGCTATGCCAAGGACGGCGGCGCGGCGATCGTCCTCGTCGGGC
ATGTCACCAAGGATGGCACGATCGCAGGTCCGCGCGTGCTGGAACATATGGTCGATACGGTGCTGGCGTTCGAGGGCGAG
CGCAGCCACCAATATCGCATCCTGCGCGCGGTGAAGAACCGCTTTGGCGGCACCGACGAAATCGGCGTCTTCGCGATGGG
CGAGGAGGGGCTGGGCGAGGTCAGCAACCCGTCGAGCCTGTTCCTGACCGACCGCAGCCGCGACGTGCCGGGATCGGTCG
TCTTCCCCGCGCTGGAGGGGACGCGCCCGGTGCTGGTGGAGGTGCAGGCGCTGACCGTGCGGCTGGCGAGCGGCGCGACG
CCGCGGCGCGCCGTCGTCGGCTGGGACAGCGGGCGCCTGGCTATGGTGCTGGCGGTGCTCGAGGCGCGCTGCGGGCTTCA
GATGGGCGGCGCCGAGGTCTATCTCAACATCGCGGGCGGCTATCGTCTGACCGATCCCGCCGCCGATCTGGCGGTCGCTG
CAGCGCTGATTTCGGCGTTCAGCGAGCGGCCGGTTCCCGCCGATGCAATCGTCTTCGGCGAATTGTCGCTGTCGGGCGAA
ATTCGCCCTGTCGCGCATGACGCGCTGCGCCTGCGCGAAGCCGCGAAACTCGGTTTTTCAACGGGCTGGGGGCCGAAGGG
GATGAAAGCGGTGAACGGTATCGGCGTTACCGGCTTCACGCGGCTCGGCGAACTCGTTGACCTGATGCTCGGGCGCGACT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-419)

AAA domain (AAA_25)

(82-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.084

100

0.481
  radA Streptococcus pneumoniae Rx1

46.667

99.338

0.464
  radA Streptococcus pneumoniae D39

46.667

99.338

0.464
  radA Streptococcus pneumoniae R6

46.667

99.338

0.464
  radA Streptococcus pneumoniae TIGR4

46.667

99.338

0.464
  radA Streptococcus mitis SK321

46.667

99.338

0.464
  radA Streptococcus mitis NCTC 12261

46.444

99.338

0.461