Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MYE78_RS11980 Genome accession   NZ_CP095842
Coordinates   2487030..2487797 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain EM-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2482030..2492797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYE78_RS11960 - 2482232..2483044 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  MYE78_RS11965 ccpN 2483070..2483708 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  MYE78_RS11970 glyS 2483809..2485848 (-) 2040 WP_032873973.1 glycine--tRNA ligase subunit beta -
  MYE78_RS11975 glyQ 2485841..2486728 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  MYE78_RS11980 recO 2487030..2487797 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  MYE78_RS11985 - 2487834..2487977 (-) 144 WP_007408286.1 YqzL family protein -
  MYE78_RS11990 era 2488133..2489038 (-) 906 WP_007408285.1 GTPase Era -
  MYE78_RS11995 - 2489019..2489429 (-) 411 WP_003152976.1 cytidine deaminase -
  MYE78_RS12000 - 2489553..2489927 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  MYE78_RS12005 ybeY 2489908..2490381 (-) 474 WP_032873971.1 rRNA maturation RNase YbeY -
  MYE78_RS12010 - 2490382..2492514 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=678756 MYE78_RS11980 WP_007408287.1 2487030..2487797(-) (recO) [Bacillus velezensis strain EM-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=678756 MYE78_RS11980 WP_007408287.1 2487030..2487797(-) (recO) [Bacillus velezensis strain EM-1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89