Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG747_RS13705 Genome accession   NZ_CP109559
Coordinates   3018438..3020417 (+) Length   659 a.a.
NCBI ID   WP_405879602.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01384     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013438..3025417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG747_RS13690 (OG747_13725) - 3014543..3014848 (+) 306 WP_405879600.1 YtxH domain-containing protein -
  OG747_RS13695 (OG747_13730) - 3015046..3016500 (+) 1455 WP_405879601.1 FGGY family carbohydrate kinase -
  OG747_RS13700 (OG747_13735) rcrP 3016705..3018438 (+) 1734 WP_405885531.1 ABC transporter ATP-binding protein Regulator
  OG747_RS13705 (OG747_13740) rcrQ 3018438..3020417 (+) 1980 WP_405879602.1 ABC transporter ATP-binding protein Regulator
  OG747_RS13710 (OG747_13745) - 3020492..3021895 (-) 1404 WP_405879603.1 RNA polymerase sigma factor -
  OG747_RS13715 (OG747_13750) dnaG 3022165..3024069 (-) 1905 WP_405879604.1 DNA primase -
  OG747_RS13720 (OG747_13755) - 3024116..3025381 (-) 1266 WP_405879606.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 70891.69 Da        Isoelectric Point: 7.1371

>NTDB_id=678745 OG747_RS13705 WP_405879602.1 3018438..3020417(+) (rcrQ) [Streptomyces sp. NBC_01384]
MAGPMGRMMAGGGPDQHSMDFKGSGKRLLAQFKPERTTMYGMLVAVVLSVTLSVIGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLAGMRRRGEGGMADMLSGTDFTPGKGIDFGAVGNVLLLALCTFLLSGLLMAVATRLVNRAVNKTVYRMRENLQAK
LSRLPLSYFDKRQRGEVLSRATNDLDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFRAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQAADPVPAARPDELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDISSMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAGVEGAARSASGKGGGGRRVGVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLI
TIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLADGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAN
GAYARLYKAQFAQAVAEVD

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=678745 OG747_RS13705 WP_405879602.1 3018438..3020417(+) (rcrQ) [Streptomyces sp. NBC_01384]
ATGGCCGGTCCCATGGGACGCATGATGGCCGGGGGTGGCCCCGATCAGCACTCGATGGATTTCAAGGGGTCCGGAAAACG
GCTCCTGGCACAGTTCAAACCCGAACGCACCACAATGTACGGGATGCTCGTCGCCGTCGTCCTGAGCGTGACGCTCTCGG
TGATCGGACCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCGGGGATCATCGGACGGCAGATGCCGGCCGGCGCC
ACCAAGGCCGAGGTCCTCGCCGGCATGCGCAGGCGCGGCGAGGGGGGCATGGCCGACATGCTCTCGGGGACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGAGCCGTCGGGAACGTACTCCTGCTCGCGCTCTGTACGTTCCTGCTGTCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCGCATGCGCGAGAACCTGCAGGCGAAG
CTCTCGCGCCTGCCCCTCTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCCACGAACGACCTCGACAA
CATCCAGCAGACCCTGCAGCAGTCGATGGGCCAGCTGGTGAACTCCCTGCTGACCATCGTCGGCGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTGGCGCTGGTCACGGTCCCGCTCTCCTTCTTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTCGGCGGACTGCGTGTCGCGTCCGGCTCGCTGTCGATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCGGGTATCGCGTCGGCGGAGCGCGTCTTCGAAC
TCCTCGACGCGGAGGAGCAGGCGGCCGACCCGGTGCCGGCGGCACGCCCCGACGAGCTGCGCGGACGGGTGGCGCTGGAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCGCTCAAGGTGGAGCCGGGCCAAACGGTGGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTCCTGATGCGCTTCTACGAGGTCACCGGCGGCCGGA
TCACCCTGGACGGCGTCGACATCTCCTCGATGTCCCGGGACGAACTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCTGGAGTAGAAGGGGCGGCGCGAAGTGCCTCCGGCAA
GGGTGGTGGTGGGCGACGGGTGGGCGTGACGCGCGGGGAGATCGAGGAGGCGGCGCGGGCCGCTCACGCGGACCGTTTCA
TCCGTACGCTCCCGGAGGGCTACGACACCGTCATCGACGACGAGGGGACGGGGGTCAGCGCGGGTGAGAAGCAGCTGATC
ACCATCGCGCGGGCGTTCCTTTCCGATCCGGTGATCCTGGTGCTGGACGAGGCGACCAGCTCGGTGGACACCCGTACGGA
GGTGCTGATCCAGAAAGCGATGGCGAAACTGGCGGACGGCCGGACGTCGTTCGTCATCGCCCACCGCCTGTCGACGATCC
GCGACGCCGACACCATCCTCGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCGCCCATGCGGAGCTGCTCGCGGCGAAC
GGGGCGTACGCCCGCCTGTACAAGGCCCAGTTCGCCCAGGCGGTGGCCGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-351)

ABC transporter (ABC_tran)

(414-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.843

96.358

0.384