Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OG747_RS13700 Genome accession   NZ_CP109559
Coordinates   3016705..3018438 (+) Length   577 a.a.
NCBI ID   WP_405885531.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01384     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3011705..3023438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG747_RS13690 (OG747_13725) - 3014543..3014848 (+) 306 WP_405879600.1 YtxH domain-containing protein -
  OG747_RS13695 (OG747_13730) - 3015046..3016500 (+) 1455 WP_405879601.1 FGGY family carbohydrate kinase -
  OG747_RS13700 (OG747_13735) rcrP 3016705..3018438 (+) 1734 WP_405885531.1 ABC transporter ATP-binding protein Regulator
  OG747_RS13705 (OG747_13740) rcrQ 3018438..3020417 (+) 1980 WP_405879602.1 ABC transporter ATP-binding protein Regulator
  OG747_RS13710 (OG747_13745) - 3020492..3021895 (-) 1404 WP_405879603.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62607.78 Da        Isoelectric Point: 6.1289

>NTDB_id=678744 OG747_RS13700 WP_405885531.1 3016705..3018438(+) (rcrP) [Streptomyces sp. NBC_01384]
MLIRLLRAYLSPYKKPIALLVFLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVFCNIGAVYYGA
RTASSVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSTV
LIAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFEAANARLTEVSLGTGRTLAL
MFPMVMTVVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVELRRHGHLELRGAGFCYPGAEEPVLKAIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVS
TIEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAEETAEATVVIVAQRVSTIREADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678744 OG747_RS13700 WP_405885531.1 3016705..3018438(+) (rcrP) [Streptomyces sp. NBC_01384]
GTGCTCATACGACTCCTTCGGGCCTACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGTTCCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCGACCCTGAACGCGCACATCATTGACAACGGTGTCGTCAAGGGAGACACGGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCTTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCGTCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCACGCGAGGTCGG
CCACTTCGGGGCGCCGTCCCTCATCACCCGTACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTCTCCACGGTC
CTGATCGCCGTGGTGCCGGTGCTCGGCATCGGAGTGACCCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCGAGGCCGCGAACGCGCGGCTGACCGAGGTGTCGCTGGGTACCGGGCGGACGCTCGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGCGCCCACCGCATCAACAGCGG
CGGTATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACGTCGAGCAGCGTGGTGCCT
CCGACCGCTCCGGTCGTGGAGCTGCGGCGCCATGGCCACCTGGAGCTCCGCGGCGCCGGGTTTTGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGGCCATCGAGCTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTGGGGCTCGTGCCCCGGCTCTTCGACGCCACCGACGGAGAGGTACTCGTCGACGGCGTGGATGTGTCG
ACCATCGAGCCGAAGCTGCTCGCGAAGACGGTCGGACTCGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGAACGGCCTGGACTCACCGATCGCACAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGCCTC
GCGATCGCCCGCACGCTCGTCCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGCGGCGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAAGCCGACCGGATCGTGGTTCTCGACGAGGGCCGGGTCGTGGGCACGGGGCGTCACCACGAGCTCATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.071

97.747

0.392