Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG204_RS32160 Genome accession   NZ_CP109556
Coordinates   7205895..7206929 (-) Length   344 a.a.
NCBI ID   WP_405687852.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01387     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7200895..7211929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG204_RS32140 (OG204_32140) - 7202195..7202950 (-) 756 WP_250302887.1 MerR family transcriptional regulator -
  OG204_RS32145 (OG204_32145) - 7203095..7203730 (+) 636 WP_250302889.1 TetR/AcrR family transcriptional regulator -
  OG204_RS32150 (OG204_32150) - 7203708..7204682 (-) 975 WP_405687850.1 oxygenase MpaB family protein -
  OG204_RS32155 (OG204_32155) - 7205042..7205932 (+) 891 WP_250302891.1 oxygenase MpaB family protein -
  OG204_RS32160 (OG204_32160) cytR 7205895..7206929 (-) 1035 WP_405687852.1 LacI family DNA-binding transcriptional regulator Regulator
  OG204_RS32165 (OG204_32165) - 7207097..7208614 (-) 1518 WP_405687854.1 M1 family metallopeptidase -
  OG204_RS32170 (OG204_32170) - 7208774..7209814 (-) 1041 WP_266645837.1 FAD-dependent oxidoreductase -
  OG204_RS32175 (OG204_32175) - 7209898..7211535 (+) 1638 WP_250302898.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36740.75 Da        Isoelectric Point: 5.2431

>NTDB_id=678623 OG204_RS32160 WP_405687852.1 7205895..7206929(-) (cytR) [Streptomyces sp. NBC_01387]
MPDPIPGSRPTLEAVAARAGVSRATASRVVNGGAGVRQLLVERVQEAVDELGYIPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGSGDYDRVARYLAGGHVDGALAFSLHTEDPLPAVIHKAGIPAVFGGRPV
WKGPESDLALPYADCDNRGGARQAVQHLVGLGRRSIAHIAGPQDQTSGIDRLDGYRDVLLDVDPGLTAQGAFTEESGAAA
MAELLARRPELDAVFAANDLMASGALQVLRSHGRRVPEDVAVVGFDNMEKVAELTDPPLTTIRQDIEGMGQLMVRMLIRG
LDRETVTPPDSVIMPTDLVRRASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=678623 OG204_RS32160 WP_405687852.1 7205895..7206929(-) (cytR) [Streptomyces sp. NBC_01387]
GTGCCCGATCCGATCCCCGGCTCCCGTCCGACCCTGGAGGCCGTAGCGGCCCGCGCGGGTGTGTCCCGGGCGACCGCGTC
GCGCGTCGTCAACGGCGGCGCCGGGGTGCGGCAGTTGCTGGTCGAACGGGTCCAGGAGGCCGTCGACGAGCTGGGCTACA
TCCCCAATCACGCGGCCAGGACACTGGTCACCCGGCGCAACGGCGCGGTGGCCGTGATCATCGCGGAGCCCGAGATCCGG
ATCTTCTCGGACCCGTTCTTCTCCCAGCAGCTGCGCGGCATAAGCCGCGAACTGACGGCGCACGACTCGCAGTTGGTTCT
GCTCCTCGTGGAGGGAAGCGGCGACTACGACCGGGTCGCCCGCTATCTCGCCGGCGGCCATGTGGACGGCGCGCTGGCGT
TCTCGCTGCACACCGAGGATCCGCTGCCCGCCGTCATCCACAAGGCCGGGATCCCGGCGGTGTTCGGCGGCCGTCCGGTG
TGGAAGGGCCCGGAGTCGGACCTCGCCCTGCCGTACGCCGACTGCGACAACCGGGGCGGCGCCCGCCAGGCCGTACAGCA
CCTGGTCGGGCTCGGGCGCCGCAGCATCGCGCACATCGCGGGCCCCCAGGACCAGACCTCCGGCATCGACCGGCTGGACG
GGTACCGGGACGTGCTGCTGGACGTCGATCCGGGGCTCACCGCCCAGGGCGCCTTCACCGAGGAGAGCGGAGCCGCAGCC
ATGGCCGAACTGCTGGCGCGCCGGCCGGAACTGGACGCCGTGTTCGCGGCCAACGACCTGATGGCGTCCGGCGCGCTCCA
GGTGCTGCGGAGCCACGGCCGGCGGGTGCCGGAGGACGTGGCGGTGGTCGGCTTCGACAACATGGAGAAGGTCGCGGAAC
TCACCGACCCTCCACTGACGACGATCCGTCAGGACATCGAGGGCATGGGGCAGTTGATGGTGCGGATGCTGATCCGCGGC
CTGGACCGGGAGACCGTCACCCCGCCGGATTCAGTGATCATGCCGACGGATCTGGTGCGCCGGGCGTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.311

100

0.366