Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG204_RS28335 Genome accession   NZ_CP109556
Coordinates   6201670..6202464 (-) Length   264 a.a.
NCBI ID   WP_250304830.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01387     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6196670..6207464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG204_RS28320 (OG204_28330) - 6196721..6197521 (+) 801 WP_405687334.1 GNAT family N-acetyltransferase -
  OG204_RS28325 (OG204_28335) - 6197662..6199464 (+) 1803 WP_329167937.1 IucA/IucC family siderophore biosynthesis protein -
  OG204_RS28330 (OG204_28340) - 6199503..6201473 (+) 1971 WP_266640445.1 ATP-dependent DNA helicase -
  OG204_RS28335 (OG204_28345) dinR/lexA 6201670..6202464 (-) 795 WP_250304830.1 transcriptional repressor LexA Regulator
  OG204_RS28340 (OG204_28350) nrdR 6202967..6203479 (+) 513 WP_250304829.1 transcriptional regulator NrdR -
  OG204_RS28345 (OG204_28355) - 6203607..6206483 (+) 2877 WP_266640443.1 vitamin B12-dependent ribonucleotide reductase -
  OG204_RS28350 (OG204_28360) - 6206600..6207205 (+) 606 WP_250304827.1 YdbC family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28597.40 Da        Isoelectric Point: 7.4239

>NTDB_id=678616 OG204_RS28335 WP_250304830.1 6201670..6202464(-) (dinR/lexA) [Streptomyces sp. NBC_01387]
MTTTADSATITAQDRSQNRLQPVHAMNDAATDPEGTVPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIAGDEATILGKVVAVLRRM

Nucleotide


Download         Length: 795 bp        

>NTDB_id=678616 OG204_RS28335 WP_250304830.1 6201670..6202464(-) (dinR/lexA) [Streptomyces sp. NBC_01387]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGACTACAGCCGGTGCATGCCATGAA
TGACGCAGCTACGGATCCCGAGGGCACGGTGCCTCCGCGACCCGCGCGCTCGCTGCCCGGTCGACCTCCCGGAATCCGGG
CGGACAGTTCCGGGCTGACCGACCGGCAGCGACGGGTCATCGAGGTGATCAGGGACTCCGTGCAACGACGTGGCTATCCG
CCCTCGATGCGGGAGATCGGTCAGGCAGTCGGGCTGTCGAGCACCTCGTCCGTCGCCCACCAGCTGATGGCGCTGGAGCG
CAAGGGTTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCGAGCACACAGACGA
CCGACACCACGGGCAAGCCCGCCGCGTCGTACGTCCCCCTGGTCGGCCGGATCGCCGCCGGTGGACCGATCCTGGCCGAG
GAGTCGGTGGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGTGACGGCGAACTCTTCGTACTGAAGGTCGTCGGCGA
CTCGATGATCGAAGCCGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTCTGGCTTCTCCCGCACAAC
GCCGCCTATCAGCCGATCGCCGGTGACGAAGCCACGATCCTCGGCAAGGTGGTGGCAGTACTCCGGCGGATGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(57-120)

Peptidase S24-like (Peptidase_S24)

(146-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

79.545

0.367