Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG204_RS10725 Genome accession   NZ_CP109556
Coordinates   2347210..2349132 (+) Length   640 a.a.
NCBI ID   WP_250298195.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01387     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2342210..2354132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG204_RS10710 (OG204_10725) - 2343593..2343892 (+) 300 WP_250298192.1 YtxH domain-containing protein -
  OG204_RS10715 (OG204_10730) - 2343923..2345368 (+) 1446 WP_329165730.1 FGGY family carbohydrate kinase -
  OG204_RS10720 (OG204_10735) rcrP 2345477..2347210 (+) 1734 WP_250298194.1 ABC transporter ATP-binding protein Regulator
  OG204_RS10725 (OG204_10740) rcrQ 2347210..2349132 (+) 1923 WP_250298195.1 ABC transporter ATP-binding protein Regulator
  OG204_RS10730 (OG204_10745) - 2349307..2350530 (-) 1224 WP_405684952.1 sigma-70 family RNA polymerase sigma factor -
  OG204_RS10735 (OG204_10750) dnaG 2350722..2352623 (-) 1902 WP_250298199.1 DNA primase -
  OG204_RS10740 (OG204_10755) - 2352721..2353998 (-) 1278 WP_266643296.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69260.95 Da        Isoelectric Point: 5.7851

>NTDB_id=678574 OG204_RS10725 WP_250298195.1 2347210..2349132(+) (rcrQ) [Streptomyces sp. NBC_01387]
MAGPGGRMMMGPTQKSMDFKGSGKRLLRMLAQDRPALFAMLTAVVGSVALSVIGPKILGRATDLIFGGIIGRQLPASTTK
AQALQGLRAKGQGAMADMLSGVDFTPGQGIDFTEVGKILLLALAAFVCAGLLMLTTTRLAARIINQAVYRMREEIQAKLS
RLPLSYYDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLVNSLLTIIGVLVMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKVFGRQEESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAETAERPENLRGSISLEKV
AFRYSPDKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIVLDGVDIARMSREDLRSGIGMVLQDTWL
FGGSIADNIAYGSSRPVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGSHEELLAADGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=678574 OG204_RS10725 WP_250298195.1 2347210..2349132(+) (rcrQ) [Streptomyces sp. NBC_01387]
ATGGCCGGTCCTGGTGGACGCATGATGATGGGGCCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAACGGCTGCT
GCGGATGCTCGCGCAGGACCGCCCCGCGCTCTTCGCGATGCTGACGGCCGTGGTCGGCAGCGTCGCTCTCTCGGTGATCG
GACCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGGCGGGATCATCGGCCGGCAGCTGCCGGCGAGCACGACCAAG
GCGCAGGCCCTTCAGGGGCTGCGCGCCAAGGGCCAGGGCGCCATGGCCGACATGCTCTCCGGTGTCGACTTCACTCCGGG
CCAGGGCATCGACTTCACCGAGGTCGGCAAGATCCTGCTGCTCGCGCTGGCGGCGTTCGTCTGCGCGGGCCTGCTGATGC
TGACCACCACCCGGCTCGCGGCACGGATCATCAACCAGGCCGTGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTACGACAAGGCGAAGCGCGGCGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACCATGCAGCAGACGATGGGACAGCTGGTCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGTTCTGGA
TCTCCTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCCTGGTGGCGACGCGGGTCGGCAAGCGGTCG
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCCCT
GGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGGAGGCGTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGCTTCA
AGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTCATC
GGCGGCCTCCGGGTCGCTTCGGGCTCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGGAGCCCGACGCGGAGACCGCCGAGCGGCCCGAGAACCTGCGCGGCAGCATCTCGCTGGAGAAGGTC
GCCTTCCGGTACTCACCGGACAAGCCGCTCATCGACGATCTGTCGCTGTCGGTGGAGCCGGGGCACACGGTCGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGATCGTGC
TCGACGGTGTCGACATCGCCAGGATGTCCCGTGAGGACCTGCGTTCCGGCATAGGGATGGTGCTCCAGGACACCTGGCTC
TTCGGCGGCTCGATCGCGGACAACATCGCGTACGGCTCCTCGCGTCCGGTCACCCGCGAGCAGATCGAGGAAGCGGCCCG
CGCGGCCCACGCCGACCGCTTCATCCGCACCCTCCCCGAGGGCTACGACACGGTGATCGACGACGAGGGCACCGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGAGCCGGTGATCCTGGTGCTGGACGAGGCGACG
AGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGTCGTACGAGCTTCGTCAT
CGCACACCGGCTGTCCACGATCCGGGACGCGGATGTGATTCTGGTGATGGAGAGCGGGGCGATCGTCGAGCAGGGGTCGC
ACGAGGAGCTGCTGGCGGCGGACGGGGCGTACGCGCGGTTGTACGCGGCGCAGTTCGCGCAGGCAGTGGTCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.939

96.563

0.395