Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG241_RS44865 Genome accession   NZ_CP109551
Coordinates   10023082..10024086 (-) Length   334 a.a.
NCBI ID   WP_405824184.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01390     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 10018082..10029086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG241_RS44850 (OG241_44800) - 10018960..10020357 (-) 1398 WP_405824178.1 YhgE/Pip domain-containing protein -
  OG241_RS44855 (OG241_44805) - 10020543..10021127 (-) 585 WP_405824180.1 TetR/AcrR family transcriptional regulator -
  OG241_RS44860 (OG241_44810) - 10021426..10022877 (+) 1452 WP_405824182.1 MFS transporter -
  OG241_RS44865 (OG241_44815) rpoS 10023082..10024086 (-) 1005 WP_405824184.1 RNA polymerase sigma factor Regulator
  OG241_RS44870 (OG241_44820) - 10024308..10024700 (-) 393 WP_405824186.1 SCO5389 family protein -
  OG241_RS44875 (OG241_44825) - 10024824..10025774 (-) 951 WP_405824188.1 ATP-binding protein -
  OG241_RS44880 (OG241_44830) - 10025968..10026510 (+) 543 WP_405824190.1 GNAT family N-acetyltransferase -
  OG241_RS44885 (OG241_44835) - 10026656..10028161 (+) 1506 WP_405824192.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37644.69 Da        Isoelectric Point: 4.7559

>NTDB_id=678548 OG241_RS44865 WP_405824184.1 10023082..10024086(-) (rpoS) [Streptomyces sp. NBC_01390]
MATDTEVTDVFDPATEDESDAPLPRLTTTGGSVDQVRDYLRLIARVRLLSAEQEVDLAKRIEAGLYAEHKLLDDPPEDPV
RRQELTILAEDAERAKSHLIEANLRLVVSVAKRYTGRGLLFLDLVQEGNTGLIRAVEKFDYTKGFKFSTYATWWIRQAIS
RALADQGRTIRIPVHLVEVINRVARTRRELIEDFGTEPTPEELADKAGVPVERLPELAAYTREPVSLHTALGEDGDGEFG
DLIEDRDSVTPTDMVTFLLLQETIQAILAEMTPREAGIISLRYGLFGGRTRTLEEIGQVYGVTRERIRQIESKTMSKLRH
PSRSQVLRDYLDAM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=678548 OG241_RS44865 WP_405824184.1 10023082..10024086(-) (rpoS) [Streptomyces sp. NBC_01390]
ATGGCGACCGATACCGAGGTGACCGACGTGTTCGACCCGGCCACCGAGGACGAGAGCGATGCTCCCCTCCCCCGGCTGAC
CACCACGGGAGGATCGGTCGACCAGGTGCGGGACTACCTCCGACTCATCGCCCGGGTCCGGCTCCTCAGCGCCGAACAGG
AGGTCGACCTCGCCAAACGGATCGAGGCCGGACTGTACGCGGAGCACAAGCTGCTGGACGACCCGCCCGAGGACCCCGTC
CGCCGCCAGGAGTTGACGATCCTCGCCGAGGACGCGGAGCGCGCCAAGTCCCACCTCATCGAGGCGAACCTCCGTCTGGT
CGTGTCCGTCGCCAAGCGCTACACGGGCCGCGGACTGCTGTTCCTGGACCTGGTCCAGGAGGGCAACACGGGCCTGATCA
GGGCCGTCGAGAAGTTCGACTACACAAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCGATCTCG
CGCGCGCTCGCCGACCAGGGCCGGACCATCCGTATCCCCGTGCACCTGGTCGAGGTCATCAACCGGGTGGCCCGCACCCG
CCGCGAGCTGATCGAGGACTTCGGGACGGAACCCACTCCGGAGGAACTGGCGGACAAGGCCGGCGTCCCGGTGGAGCGCC
TGCCCGAACTCGCCGCCTACACCAGGGAGCCCGTCTCGCTGCACACCGCCCTCGGCGAGGACGGCGACGGCGAGTTCGGT
GACCTGATCGAGGACAGGGACAGCGTCACCCCCACGGACATGGTCACCTTCCTGCTCCTCCAGGAGACCATCCAGGCCAT
CCTCGCGGAGATGACCCCGCGAGAAGCCGGCATCATCTCCCTGCGCTACGGCCTGTTCGGCGGCCGGACCAGAACCCTGG
AGGAGATCGGCCAGGTGTACGGCGTGACCCGCGAACGTATCCGCCAGATCGAGTCCAAGACGATGTCCAAGCTGCGCCAC
CCGTCCCGTTCCCAGGTGCTGCGGGACTACCTCGACGCCATGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(36-67)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 region 3 (Sigma70_r3)

(178-255)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.252

96.108

0.377