Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG241_RS40905 Genome accession   NZ_CP109551
Coordinates   9117627..9118406 (-) Length   259 a.a.
NCBI ID   WP_006378242.1    Uniprot ID   L7F7L5
Organism   Streptomyces sp. NBC_01390     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9112627..9123406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG241_RS40895 (OG241_40870) - 9114644..9115378 (+) 735 WP_405822885.1 GNAT family N-acetyltransferase -
  OG241_RS40900 (OG241_40875) - 9115463..9117478 (+) 2016 WP_405822887.1 ATP-dependent DNA helicase -
  OG241_RS40905 (OG241_40880) dinR/lexA 9117627..9118406 (-) 780 WP_006378242.1 transcriptional repressor LexA Regulator
  OG241_RS40910 (OG241_40885) nrdR 9118950..9119501 (+) 552 WP_405822889.1 transcriptional regulator NrdR -
  OG241_RS40915 (OG241_40890) - 9119666..9122566 (+) 2901 WP_405822891.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28010.73 Da        Isoelectric Point: 7.4237

>NTDB_id=678540 OG241_RS40905 WP_006378242.1 9117627..9118406(-) (dinR/lexA) [Streptomyces sp. NBC_01390]
MTTTADSATITAQDRSQSRLEPVHAMNEATNPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDVVAAMLDGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRL

Nucleotide


Download         Length: 780 bp        

>NTDB_id=678540 OG241_RS40905 WP_006378242.1 9117627..9118406(-) (dinR/lexA) [Streptomyces sp. NBC_01390]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCCCAAGCGGTCCCTCCCTGGACGACCTCCAGGAATCCGAGCGGACAGCTCGGGCCTCA
CCGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAACGACGCGGTTACCCGCCGTCGATGCGCGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACCTCATCGGTCGCACACCAGCTCATGGCTCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCGCATCGCCCGCGCGCCTATGAAGTACGCGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCCCTTGTGGGCCGTATCGCCGCCGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTGTTCCCCCTCCCCCGCCAACTGGTGGGTGACGGAGAGCTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTACGCCGCCAGCCGGTCGCCGAGAACGGCGATGTCGTGGCCGCGATGCTGG
ACGGCGAAGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTCCGCCGCCTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7F7L5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.976

80.695

0.363