Detailed information NTG0678518

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG241_RS33380
• Genome accession: NZ_CP109551
• Coordinates: 7393233..7394234 (+)
• Length: 333 a.a.
• NCBI ID: WP_405820615.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01390
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 7388233..7399234

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG241_RS33355 (OG241_33330)	-	7388579..7389220 (+)	642	WP_405820606.1	TetR/AcrR family transcriptional regulator	-
OG241_RS33360 (OG241_33335)	-	7389368..7390900 (+)	1533	WP_405820607.1	MFS transporter	-
OG241_RS33365 (OG241_33340)	-	7391012..7391521 (-)	510	WP_405820609.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG241_RS33370 (OG241_33345)	-	7391655..7392446 (+)	792	WP_405820611.1	DODA-type extradiol aromatic ring-opening family dioxygenase	-
OG241_RS33375 (OG241_33350)	-	7392526..7393044 (-)	519	WP_405820613.1	GNAT family N-acetyltransferase	-
OG241_RS33380 (OG241_33355)	rpoS	7393233..7394234 (+)	1002	WP_405820615.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG241_RS33385 (OG241_33360)	-	7394693..7395658 (-)	966	WP_405820617.1	helix-turn-helix transcriptional regulator	-
OG241_RS33390 (OG241_33365)	-	7395721..7397250 (+)	1530	WP_405820618.1	MFS transporter	-
OG241_RS33395 (OG241_33370)	-	7397480..7398241 (+)	762	WP_405820620.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG241_RS33400 (OG241_33375)	pfkB	7398254..7399201 (+)	948	WP_405820621.1	1-phosphofructokinase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37049.86 Da
• Isoelectric Point: 5.2420

>NTDB_id=678518 OG241_RS33380 WP_405820615.1 7393233..7394234(+) (rpoS) [Streptomyces sp. NBC_01390]
MATRAVARRTSSATGGTVGGARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAKAEA
DATVEELEALYAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPAEIAAELDTNAARVVDVLDWARDPVSLNMAVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=678518 OG241_RS33380 WP_405820615.1 7393233..7394234(+) (rpoS) [Streptomyces sp. NBC_01390]
ATGGCAACCCGTGCCGTCGCCCGTCGTACGTCGTCCGCCACCGGCGGGACCGTCGGCGGCGCACGCAGTGTTCGCGCCCA
TGGCGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACTTGGACGAGATAGCCCGCACCCCGCTGCTCGACGCCGCGA
AGGAGGTCGAGCTGTCGCAGACCATCGAAGCCGGTGTCTTCGCCCGCCAGATCCTCGACGGCGAGGCGAAGGCCGAGGCG
GACGCCACCGTCGAGGAGCTCGAGGCGCTCTACGCCGAGAGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCG
GCTGGTTGTCGCCGTGGCGCGCCGTTACCCCCGCAGCGGCCTGCCCCTTCTCGACCTGATCCAGGAGGGCAACGCCGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACATACGCCACCTGGTGGATCCGTCAGGCC
ATCACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTTCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCG
CGTGCAGCGCGAGTTCAACCGCAAGAACGGCCGGGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTGGACACGAACGCGG
CGCGCGTGGTCGACGTCCTGGACTGGGCACGCGACCCGGTGTCACTGAACATGGCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTCCTGGAGGACACGTCGGCGGTATCGCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTGGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGTCGACGGCCGGGAGCGCA
CGCTGACGGAGGTCGGCAAGGAACACGGGCTGACCCGTGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTG
AAGAAGCTGGCCCGCGACACGGGCTTCGACGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (35-68)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70, region 4 (Sigma70_r4) (270-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	89.79	0.36