Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG241_RS18410 Genome accession   NZ_CP109551
Coordinates   4119273..4121207 (+) Length   644 a.a.
NCBI ID   WP_405816575.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01390     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4114273..4126207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG241_RS18395 (OG241_18385) - 4115400..4115705 (+) 306 WP_405816571.1 YtxH domain-containing protein -
  OG241_RS18400 (OG241_18390) - 4115835..4117295 (+) 1461 WP_405816573.1 FGGY family carbohydrate kinase -
  OG241_RS18405 (OG241_18395) rcrP 4117540..4119273 (+) 1734 WP_405816574.1 ABC transporter ATP-binding protein Regulator
  OG241_RS18410 (OG241_18400) rcrQ 4119273..4121207 (+) 1935 WP_405816575.1 ABC transporter ATP-binding protein Regulator
  OG241_RS18415 (OG241_18405) - 4121347..4122768 (-) 1422 WP_405816576.1 sigma-70 family RNA polymerase sigma factor -
  OG241_RS18420 (OG241_18410) dnaG 4122980..4124893 (-) 1914 WP_405816577.1 DNA primase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69872.27 Da        Isoelectric Point: 5.3105

>NTDB_id=678489 OG241_RS18410 WP_405816575.1 4119273..4121207(+) (rcrQ) [Streptomyces sp. NBC_01390]
MAGPMGRMMAGGGPDQQSLDFKESGKRLLSQFRPERATMYVMLCAVFVSVGLSVVGPKILGRATDLVFSGIIGRQFESGS
TKAEVLAGMRKRGEDGMADMLSGTDFTPGKGIDFGAVGEVLGLALVVFVFAGLLMLVATRLVNRSVNRTVYRMRADLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFYIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPVPGVRPDELRGLVSLE
HVSFRYEPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGSIAENIAYGAAREREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLGADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=678489 OG241_RS18410 WP_405816575.1 4119273..4121207(+) (rcrQ) [Streptomyces sp. NBC_01390]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGGGGCGGCCCCGACCAGCAGTCGCTGGACTTCAAGGAGTCCGGCAAACG
GCTCCTCTCCCAGTTCAGGCCCGAACGGGCCACGATGTACGTGATGCTGTGCGCGGTGTTCGTGAGCGTGGGCCTGTCGG
TGGTGGGCCCGAAGATCCTGGGGCGGGCGACCGACCTGGTCTTCTCCGGCATCATCGGACGGCAGTTCGAGAGTGGCAGT
ACGAAGGCCGAGGTTCTCGCCGGTATGCGGAAGCGCGGCGAGGACGGCATGGCCGACATGCTCTCCGGTACGGACTTCAC
ACCGGGCAAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGGGGCTCGCCCTGGTGGTGTTCGTGTTCGCGGGGCTGC
TGATGCTGGTGGCCACGCGGCTGGTGAACCGGTCGGTCAACCGGACCGTGTACCGGATGCGCGCGGATCTTCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGTGGTGAGGTGCTGTCCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCCCTCCTCACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTTCCGCTGTCGTTCTACATCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTGGCC
GTCGTGGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGGGATGTGCAGGCTTTCATCCAGTATTCGCGTCAGTT
CTCCATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCCTCGGCCGAGCGGATCTTCGAAC
TGCTGGACGCGGAGGAGCAGCAGGCCGATCCGGTGCCGGGGGTACGGCCGGACGAGCTGCGTGGGCTGGTCTCGCTGGAG
CATGTGTCGTTCCGGTACGAGCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGTCGGTGGAGCCGGGGCACACGGTCGC
GATCGTCGGGCCCACGGGGGCGGGGAAGACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTTTCCGGGGGGCGGA
TCACTCTCGACGGGGTGGACATCGCGTCGATGTCCCGGGACGAGCTCCGGGCCGGGATCGGGATGGTCCTCCAGGACACC
TGGCTGTTCGGTGGGTCCATCGCGGAGAACATCGCGTACGGGGCGGCACGGGAGCGCGAGGTGACGCGCGGGGAGATCGA
GGAGGCTGCGCGGGCCGCGCACGCCGACCGGTTCATCCGTACCTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACGGGGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCCGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCCGTGGACACGCGGACGGAGGTTCTCATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGGAC
GTCGTTCGTGATCGCGCATCGGCTGTCGACGATTCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTCG
AACAGGGGGCCCACGGGGAGCTGTTGGGGGCGGACGGGGCCTATGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGATTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.902

96.429

0.394